Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq8 127 3e-24 seq12 104 3e-17 seq9 100 4e-16 >seq8 Length=27946405 Score = 127 bits (140), Expect = 3e-24 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || |||||||| || || || || || ||||||||||| ||||||||| | Sbjct 3284811 GCGGTGTTGACGATGTCAAAGCCGACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCT 3284870 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 || ||||| ||| ||| |||| || ||||| | ||| || |||||||||| ||| | Sbjct 3284871 GGCGAGCAAATGGGATTCCCCATCAGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACC 3284930 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || |||| || || ||||| | || || || || |||| | ||| | |||||| Sbjct 3284931 ATCGTCTCCCCAAAAATGGCGTTCAGCCGGGGCTTCTCCACGAGCAGGCCGGGGTAGAGC 3284990 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| |||| ||| ||||| || |||||| ||| || || || || || ||| Sbjct 3284991 TCCACAGCGTCGATGTCACCATACAGCTCTTCCAGTATGGCGGCCATTTCTTTGTCTCCT 3285050 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| ||||| |||||| |||| || ||||||||||||| || || ||||| ||| Sbjct 3285925 TCAGGCATCAGAGGGTGCCAGTGGTAAAGTGTATTGAACTCGGATGCGATGCGGTTTTGG 3285984 Query 9613 TACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCG 9672 ||||| ||| | | ||| || | ||| || ||||| | || | |||||| || ||| Sbjct 3285985 TACTGGAAGCGTTTGCTGAAGAGCAGCTCTGGATCAAACTTCAGTTTGAAGTGATAACCG 3286044 Query 9673 CTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 || || ||||| || || | ||| | ||| || ||||| || || Sbjct 3286045 CTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCACC 3286091 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||| || || | ||| || |||||||| ||||| ||||| || || | ||| Sbjct 3287317 TCACCTACGACTCCCATAGGGGTTGGGCAGTCCGCCGGAACTGGAGGAAGGGTACGAGTA 3287376 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || ||| | ||||||||||| ||||| ||||| || ||||| Sbjct 3287377 TAGTAGGACAGGTTGGAATAGGCTTCCCAGCTTTTGTATCCATAGTCCGCATTGTAAGTA 3287436 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCTA 10537 || |||||||||||||| | ||| | |||| Sbjct 3287437 GGAGGACTGTCAATCATATGGGATCGTGCTA 3287467 >seq12 Length=26439574 Score = 104 bits (114), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 ||||||||||| || || || | || ||||| |||||||| |||||||| || |||||| Sbjct 9127882 TTCACGATGTCGAAGCCGACTTTGCCTCCGAATGTGCTGGGCTTCCAGTATGCTGGGGAG 9127941 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 || ||| ||| ||| ||| ||||| | |||||| || || |||| || | ||||| Sbjct 9127942 CATATGGGGTTACCCAGGAGGCCTTTGAGGGAAAAGGGGGCGCCCATTTCCACCATGCTT 9128001 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 || ||||| || || || | || | || || | | || || | ||| | ||| | | Sbjct 9128002 TCTCCGAATATCGCCCCCGTTCGAGTCTTCTCCAGCAGTAACCCGGGGTAAAATTCAAGA 9128061 Query 9122 GCCTCGACGTCGCCATAGAG 9141 || |||| || || ||||| Sbjct 9128062 GCGTCGATATCCCCGTAGAG 9128081 >seq9 Length=34117797 Score = 100 bits (110), Expect = 4e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 8939 GTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGG 8998 ||||| | ||||| || || || || |||||||||||||| ||||||||| |||| Sbjct 12530304 GTTTTGATGATGTTGAAGCCCGTCTCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGA 12530363 Query 8999 GAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATG 9058 ||| |||| ||| | | || ||||||| ||| || || || |||| ||| | ||| Sbjct 12530364 GAGTTGATGGGATTCCCAAGCAGGCCTTTCAGGGAGAAAGGGGCTCCCATCTCCACCATG 12530423 Query 9059 CTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCG 9118 ||||| ||||| |||| ||| || | |||||| | |||| ||| | || | || Sbjct 12530424 CTCTCTCCGAATATGGAGTTGGGGCGAGCTTTTTCCATCATGAGGCCGGGATAAAACTCC 12530483 Query 9119 ACAGCCTCGACGTCGCCATAGAG 9141 | || || | |||||| ||||| Sbjct 12530484 AGGGCATCAATGTCGCCGTAGAG 12530506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723702959011200