Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq13 149 8e-31 seq11 100 3e-16 >seq13 Length=33524197 Score = 149 bits (164), Expect = 8e-31 Identities = 881/1388 (63%), Gaps = 38/1388 (3%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| ||||| Sbjct 17856088 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 17856029 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || ||||||||||| |||| || |||||||| | | || || ||| Sbjct 17856028 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 17855969 Query 116023 TTGAGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGG 116079 || || | |||||| | || | | |||| | |||||||| || ||||| Sbjct 17855968 TTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGCGTCTTC---TCCCACATGTCGTACTGG 17855912 Query 116080 AGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 116137 || || || | | |||| ||||| ||||| | ||||| || ||||| | | | Sbjct 17855911 AGAATGCCCTTGCTGACG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGG 17855854 Query 116138 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA 116197 | | ||| |||| ||||| ||||| ||||| || || ||||| || || | || | Sbjct 17855853 CGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGA 17855794 Query 116198 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGAC 116257 || ||| ||| | || |||| | | || || || || | || || |||| Sbjct 17855793 GCAGCTGGGCTTCGGGGCTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGAC 17855734 Query 116258 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTCCACG 116316 | ||||| |||| || || || | || | | | || ||| | ||| || || Sbjct 17855733 CCTGGACGCCGATCCCGATCGGCCTGTGACGCTTGTTGGACGTCTCG-GCTTCAGGGACC 17855675 Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 116376 || || | || | ||||| | | | || || ||||| || ||||| |||| Sbjct 17855674 GGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAG 17855615 Query 116377 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 116436 ||||| | | | || ||| | || |||| |||| ||| | |||||||| Sbjct 17855614 GCCAGCTTCTTGAAGTCGAAAGTCCG---CTCTGGCGTGACGTACATGTTGAGGGCGATG 17855558 Query 116437 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 116496 || ||||| || || || | ||||||||| |||||||| | | ||||| || Sbjct 17855557 GAGGCCAGGTTGCAGACGGCCACCTCATCCTTGCTGGTGTACTCCACCACCTCCGTGCAG 17855498 Query 116497 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 116556 | ||| | || || ||||||| |||||| || || ||| |||| || || ||| Sbjct 17855497 AGATTGCTGCATTTGATCGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCGTCC 17855438 Query 116557 TTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-C 116615 ||||||||||| || |||||||| || || || ||||||| || || || | ||| | | Sbjct 17855437 TTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGC 17855378 Query 116616 ATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGC 116675 | ||| || || | || | | ||| |||| ||| || | |||||||| Sbjct 17855377 TGCTGCGCCTTTACCACCTTC-TTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTT 17855319 Query 116676 CTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAG 116734 ||| ||||| || ||| |||| ||| ||||| || || ||||| | | | Sbjct 17855318 CTCGAACTCCTCTCCC-CAGCACTCGTCTAGCCCAGGACACTCGCTGGGACACATCAAGG 17855260 Query 116735 ACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 116792 |||| | || | ||| || | ||||||||| ||||| |||||||| | || | Sbjct 17855259 ACCA--GTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTA 17855202 Query 116793 GAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 116851 ||| ||||| | | | ||| || | | || || || || ||||| |||| Sbjct 17855201 GAAAAGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAAGT 17855143 Query 116852 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGACGA 116907 | | | || ||||||||| |||||||||| |||| | ||| || | | Sbjct 17855142 CGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTG- 17855084 Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967 || |||||| || || | ||||| ||| | || | ||||| || | | || Sbjct 17855083 CCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCG 17855024 Query 116968 TCAGATTGGCCATTTGT-CCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTG 117026 | || | ||| || || || ||| | | | | | || || | | Sbjct 17855023 TTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTTCCCG-TCGATCGGATGCAGCTCACCGC 17854965 Query 117027 CATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGAT 117086 || || || || || || |||| || || | ||||||| | | || || | ||||| Sbjct 17854964 CACGCCGATCCCGCCAGCGGACTTGGAAATGAGAGCGCACTGCTTCAGGGTGTCATAGAT 17854905 Query 117087 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCC--TT 117144 || ||||| ||| |||| | |||| ||||||||||| |||| || |||| || Sbjct 17854904 GCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTT 17854845 Query 117145 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTT 117203 | || || |||||||||||||| || | |||||| ||||| || | | |||| Sbjct 17854844 G--GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGAG 17854788 Query 117204 ATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCAT 117263 | ||||||||| | | | | | |||||| |||||| || || | ||| |||| ||| Sbjct 17854787 GTTGTAGGTCTCGATGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACTGACACCCTCAT 17854728 Query 117264 AAACATGT 117271 | ||||| Sbjct 17854727 GAGCATGT 17854720 >seq11 Length=28875558 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||||| || ||| || || ||||||||||| || | ||||| Sbjct 15203443 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 15203384 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||| | || ||| ||||||||| |||||||| ||||||||||| ||||| | Sbjct 15203383 TCAGCCAGTAGATAGCAGCAAATGAGCCCGAGAAGAAAATCCCCTCCACTGCTGCGAAAG 15203324 Query 127659 CAAATAGACGCTC 127671 | | |||||||| Sbjct 15203323 CCACAAGACGCTC 15203311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613485972650880