Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq13 203 5e-47 seq14 98.7 2e-15 >seq13 Length=33524197 Score = 203 bits (224), Expect = 5e-47 Identities = 584/889 (66%), Gaps = 22/889 (2%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||| | ||| ||||| | || | ||| || | | |||| | || |||||| Sbjct 17855516 CTCCACCACCTCCGTGCAGAGATTGCTGCATTTGATCGTGCCCAGGTTCTTCTGGTTGCT 17855457 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001 ||| | ||| || | ||||||||| | |||| | ||| | ||| | || |||| || || Sbjct 17855456 CTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTC 17855397 Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAG 205058 | || || | ||| | | | |||| |||| | |||||| | |||||| Sbjct 17855396 GATGA-TGGCGTACCAGAGCTGCTGCGCCTTTACCACCTTCTTCAC---CCTCCCTTCCT 17855341 Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTG 205115 ||| ||| | ||||| ||| | | || || || | || |||| | |||| | Sbjct 17855340 TCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCTA---GCCCAG 17855284 Query 205116 GACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACA 205175 |||| | |||||||||||| ||||| ||| | | | ||| |||| ||| |||| Sbjct 17855283 GACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACA 17855224 Query 205176 GGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGT 205235 |||| |||||||| | |||| || ||||| | ||| || | || | ||| || Sbjct 17855223 GGTCAGGGATCCACAAGGCGTAGAAAAGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGT 17855164 Query 205236 TCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCC 205294 |||| |||| ||||| ||| || | | |||| |||||||||||| | ||| ||| Sbjct 17855163 TCTTCTTCAGCTCCAGG-AAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCG 17855105 Query 205295 ATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACT 205354 | || || || |||||||| || |||||||| || ||||| | | |||| ||||| Sbjct 17855104 AAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACT 17855045 Query 205355 CGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCA 205414 | ||||||||| |||| ||||||| | | ||||| |||| | |||| ||| | | Sbjct 17855044 CTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCGATG---TAGCTTCCC 17854988 Query 205415 GCCCTCACGTTGGAG---ATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCG 205471 | | | || || | ||| |||| |||||||||| |||||| || | ||| Sbjct 17854987 GTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGAGCG 17854928 Query 205472 CACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAG 205531 |||| | ||| ||| ||||||||| ||||| |||||| || | | ||| || Sbjct 17854927 CACTGCTTCAGGGTGTCATAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAG 17854868 Query 205532 CACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTG 205591 || | ||||| | |||||| || |||| |||||| || || ||||||| || Sbjct 17854867 CAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTG 17854808 Query 205592 AAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGA 205651 || | |||||| || |||||||||| | || || | || ||||| Sbjct 17854807 AACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCGGCGTCGATGTCTCGCCCGTGG 17854748 Query 205652 ATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACC 205711 || || | | | |||||||| | ||| || || | ||| ||| || |||| | | Sbjct 17854747 ATCCCAACTGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATC 17854688 Query 205712 TTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGG 205760 || ||||| |||| | ||| || || || | | || |||||| ||| Sbjct 17854687 TTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGG 17854639 Score = 176 bits (194), Expect = 7e-39 Identities = 354/516 (69%), Gaps = 13/516 (3%) Strand=Plus/Minus Query 204100 CCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158 ||||| | || ||||||| || ||||| | || || ||||||| ||||| ||| Sbjct 17856216 CCTGAATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGC 17856157 Query 204159 ACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCC 204218 | |||| ||| | ||||| ||||||| ||||| || |||||||||||||||| Sbjct 17856156 GCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCC 17856097 Query 204219 CTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAG 204278 |||||| | | |||| ||||| | | |||| | |||||||||||| | ||||| | Sbjct 17856096 TGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGG 17856037 Query 204279 CGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGA 204338 ||||| |||||||||||||| ||||| |||||| ||| | ||| || | ||| || Sbjct 17856036 CGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGA 17855977 Query 204339 CCCTGCGCTTCAGAGAGGTCCAGTCGTGCA--TCGCACTGGGT-TTCACGCCCCACATGT 204395 | | |||||| ||||||| || ||| | | || ||| ||||||||| Sbjct 17855976 TCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGCGTCTTC---TCCCACATGT 17855920 Query 204396 CGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCC 204454 || |||| | ||||| | ||||| || ||||| ||||||| || ||| || | Sbjct 17855919 CGTACTGGAGAATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGA-GC 17855861 Query 204455 TCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGA 204514 ||| | || |||| ||| ||| ||| |||| | ||| |||||||| |||||||| Sbjct 17855860 TCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGG 17855801 Query 204515 ACGTTTA--ATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGT 204572 | ||| | | ||| ||| || | | || |||| | | || || | || ||| Sbjct 17855800 ATGTTGAGCAGCTG--GGCTTCGGGGCTTTCGAACGGGTGCCGCATCAGGATGAAGGCGT 17855743 Query 204573 CCGCCAAGCCCTGCACTCCGATTCCCAACGGTCTGT 204608 | |||| ||||| || ||||| || | ||| |||| Sbjct 17855742 CGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGT 17855707 Score = 100 bits (110), Expect = 5e-16 Identities = 115/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | ||||||| | |||||| | |||||| || || |||| Sbjct 17856484 CCTGCTTCCAGCCGTAGAAGTGCATGCTGGTCAGTTTTCCATAGTTGGGCTCAGCGATGT 17856425 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | |||||||| |||||||| ||||||||| ||||| || || ||||| ||||| | | Sbjct 17856424 GGATGTTCAGCGACTGGCTCTGGTCGATG-AAGGCTCCACGGTCTGCTGCCATCCTCAGC 17856366 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 | ||||||||| || || ||||| || || || Sbjct 17856365 ACGGTCTTCTGGGAGATTTCCCAAACGGTTTT 17856334 >seq14 Length=28338960 Score = 98.7 bits (108), Expect = 2e-15 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| ||||| | ||||||| | ||||||| ||| || || || |||||||| Sbjct 9808400 CTTCCATCCGTAAAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGAAT 9808459 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 |||||||||||| || || |||||| ||| ||| |||||||| ||||| |||| | || Sbjct 9808460 GTTCAGAGACTGACTCTGATCGATG-TAGGTGCCACGATCTGCTGCCATCTTGAGGACGG 9808518 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTT 204060 | ||||| || || ||||| || || || Sbjct 9808519 TTTTCTGGGAGATTTCCCAAACTGTTTT 9808546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795127687630080