Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq14 141 9e-29 seq21 129 6e-25 seq12 123 2e-23 seq11 96.9 3e-15 >seq14 Length=28338960 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| ||||| ||||||||||||||| | || || ||| ||| Sbjct 16342545 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGT 16342604 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | |||| ||||||| || || ||||| || ||| | ||||| Sbjct 16342605 GACACCATTGAGAACG-TCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCA 16342663 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || |||||||||||||| || | ||||||||| |||||||| Sbjct 16342664 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAGGATGGCCGCACCCTCTCTGACTACAA 16342723 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||| || ||| | || || || | || || ||| | || || |||| Sbjct 16342724 TATCCAGAAAGAATCCACCCTCCACCTTGTTCTCCGTCTCAGGGGTGGCC 16342773 Score = 129 bits (142), Expect = 6e-25 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || ||||| ||||||||||||||| | || || ||| | Sbjct 16346312 AAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCC 16346371 Query 38300 CACCGACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || ||||| | || |||| | |||| || |||| || || ||||| || ||| | | Sbjct 16346372 CAGCGACACCATTGAGAACG-TCAAAGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTG 16346430 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| |||| || | || || || |||||||| || | |||||||| |||| Sbjct 16346431 ACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACT 16346490 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| |||||||| ||| | || || || | || || ||| |||| || ||| Sbjct 16346491 ACAATATCCAAAAAGAATCCACCCTCCACCTTGTTCTCCGTCTGAGGGGTGGC 16346543 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||||||||||||| | || || ||| ||| | Sbjct 16346772 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGC 16346831 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || || ||||| || ||| | ||||| Sbjct 16346832 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 16346891 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| |||||||||| Sbjct 16346892 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 16346951 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||| ||||| | || || || | || || ||| | || || |||| Sbjct 16346952 ATCCAGAAGGAGTCCACCCTCCACCTTGTTCTCCGTCTTAGGGGTGGCC 16347000 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| ||| Sbjct 16346544 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16346603 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||||||| || || ||||| || ||| | ||||| Sbjct 16346604 GACACCATTGAGAACG-TCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCA 16346662 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || || |||||||| || | |||||||| ||||||||| Sbjct 16346663 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 16346722 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || |||| || ||| | || || || Sbjct 16346723 CATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTCAGGGGTGG 16346770 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || || ||||| || ||| | ||||| ||| |||| || | || ||||| Sbjct 16342401 AAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAG 16342460 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | ||||| || ||||||||||||||| ||||| | || || || Sbjct 16342461 CAGCTGGAAGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTCAC 16342520 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || || || Sbjct 16342521 TTGGTCCTCCGTCTCAGGGGTGG 16342543 >seq21 Length=25773841 Score = 129 bits (142), Expect = 6e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||||||||| ||||||| |||||| |||| Sbjct 1860319 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGGGAGATG 1860260 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | |||||||| ||| |||| | |||||||| || ||| ||||||||||||||| Sbjct 1860259 AAGTAGCGCTCGTCGTCCTTCAGGGACTCCCAGTGCTGCAGGTCTTTGGACAGGTCCACC 1860200 Query 133399 T 133399 | Sbjct 1860199 T 1860199 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| | | ||||| ||||||||||| |||| ||||||||| ||||| | || | Sbjct 1860915 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1860856 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || ||||||||||| || || ||||||| ||||| ||||| ||||| | Sbjct 1860855 TCAGCCAGAAGATGGCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 1860796 Query 133037 CCACCA 133042 |||||| Sbjct 1860795 CCACCA 1860790 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/117 (78%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 |||||||| |||||| || | ||||| || ||||| | ||||||||||||||| || Sbjct 1860515 GTAGGTGTTGATGAGCAGGCTG--TACATCTCAGAGTGGATGTTCTCCATGGCGATCTGG 1860458 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 |||||||| || |||| ||||| ||||||||| || || | ||| ||||| ||| Sbjct 1860457 AAGCCGTAGAAACACCTGGCCTCCGTCACCTGCACCTCCTGCGTGAAGCGCTCCACC 1860401 >seq12 Length=26439574 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| ||||| || || ||||||||| | || || ||| || Sbjct 2383094 AAGATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCC 2383153 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | | | |||| | |||| ||| || | || ||||| || |||| | || Sbjct 2383154 AGTGATACCATTGAGAACG-TGAAAGCAAAGATTCAGGATAAAGAAGGCATTCTTCCTGA 2383212 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| | ||||| | || |||||||||||||| || | |||||||| ||||| Sbjct 2383213 CCAGCAGAGACTCATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTA 2383272 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || | || ||||||| ||| | || || ||| Sbjct 2383273 CAACATCCAGAAGGAGTCCACCGTCCACCTGGTGCTCCGTCTCAGGGGAGGC 2383324 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| ||||| || || ||||||||| | || || ||| ||| Sbjct 2383325 ATGCAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 2383384 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | ||| || | || ||||| || |||| | ||||| Sbjct 2383385 GATACCATTGAGAACG-TGAAGGCAAAGATTCAGGATAAAGAAGGCATTCTTCCTGACCA 2383443 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || || | || |||||||||||||| || | |||||||| |||||||| Sbjct 2383444 GCAGAGACTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAA 2383503 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 2383504 CATCCAGAAGGA 2383515 >seq11 Length=28875558 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||||||| ||||||||||||| | | || | ||| ||||||||||| | || | Sbjct 15203443 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 15203384 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| | || || || || |||||| ||||| | ||||| || || ||||||| Sbjct 15203383 TCAGCCAGTAGATAGCAGCAAATGAGCCCGAGAAGAAAATCCCCTCCACTGCTGCGAAAG 15203324 Query 133037 CCACCAGGCGCTCGCC 133052 |||| || ||||| || Sbjct 15203323 CCACAAGACGCTCCCC 15203308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500155494021120