Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq7 215 4e-50 seq35 105 5e-17 >seq7 Length=31413364 Score = 215 bits (238), Expect = 4e-50 Identities = 935/1469 (64%), Gaps = 16/1469 (1%) Strand=Plus/Plus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| || |||| | ||| || || || |||||||| || | |||||| || ||||| || Sbjct 10303070 TTTGTCGACGGCGGACACGTTTAGGATGCCATTGGCGTCGATATCAAAGGTAACTTCGAT 10303129 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 || || || ||||| ||||||| || | || | | ||| | ||||| ||| Sbjct 10303130 CTGTGGCACGCCTCTGGGAGCAGGAGGAAGACCCGAGAGCTCAAACTTCCCCAGGAGATT 10303189 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428 || || || || | || ||||||||| | | || || ||| | | || || Sbjct 10303190 GTTGTCCTTTGTCATGGCTCTCTCACCCTCGTAGACCTGAATCAGGACTCCTGGCTGGTT 10303249 Query 517429 ATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCAA 517487 ||| || || || | || | |||| | | | | || || || ||||||| | | Sbjct 10303250 ATCCGAGTACGTGGAGAAGA-TCTGAGTCTGCTTCGTGGGGATGGTGGTGTTTCGCTTGA 10303308 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 ||| | ||||||| ||||| ||||| || | || || || | |||| ||||| | Sbjct 10303309 TAAGAGGTGTCATAACGCCACCGGCTGTCTCAATGCCCAGCGACAAGGGAGCCACATCCA 10303368 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607 || | | || ||| | ||||| ||| | ||| | || ||||| || || | | Sbjct 10303369 GGAGCAGTAAATCTTGGACATTTTCTGAAGTGTCACCCATGAGGATAGCAGCCTGGACGG 10303428 Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667 | || ||||| || || ||||||||||| || | | | ||||| | | ||||||||| Sbjct 10303429 CTGCGCCATAGGCCACCGCTTCATCAGGGTTGATGCTCTTGTTTAGCTCTCTACCATTGA 10303488 Query 517668 AAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 517727 | || | || || | | | || || || | | || || ||||||| |||| Sbjct 10303489 AGAAGTCCTGCAGGAGCTTTTGGATTTTGGGGATTCTTGTAGAGCCACCAACTAGGACAA 10303548 Query 517728 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 517787 ||| || | || ||||||||||| || | ||| || | || ||||| || || | Sbjct 10303549 CTTCTTGGATCTTGGATTTATCCAGCTTAGCATCTTGTAGGGCCTTCTCAACTGGCTCCA 10303608 Query 517788 GACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 517847 | | || || | |||||| || || ||||| || || || || ||| | Sbjct 10303609 GTGTTCCCCTGAAGAGGTCTGAGTTGAGCTCCTCGAAGCGGGCCCTTGT--GATTGAGGT 10303666 Query 517848 -TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 517905 || || ||||| || || || | || |||| ||||| | | ||||| || || Sbjct 10303667 GTAAAAGTCAATGCCCTCAAAGAGTGAGTCAATCTCAATGCTTGCCTGAGTGCTGGAGGA 10303726 Query 517906 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTG 517961 | | | || || | || || ||||| | ||||| | | ||| | | ||| Sbjct 10303727 CAAGGTCCTCTTTGCTCTCTCGCAAGCTGTGCGCAGTCTCCTCACAGCTCTCTTGTTCTG 10303786 Query 517962 ATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGAC 518021 |||| || | || | ||||| || || || || ||| | | || | | Sbjct 10303787 GCTGATG----TCCTTCTTGTGCTTTCTTTTAAACTCCTCCACAAAGTGGTTGACCATTC 10303842 Query 518022 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 518081 | || |||||||| || || || | | || | || | || ||| | || | || | Sbjct 10303843 GGTTGTCAAAATCCTCCCCGCCAAGGTGTGTGTCCCCAGCTGTGGCTTTCACCTCAAATA 10303902 Query 518082 GTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAA 518141 || ||||||| | || | | || ||| || || ||||| | |||||| || | Sbjct 10303903 TGCCGTCTTCAATGGTCAGGATGGACACGTCAAAAGTGCCTCCACCAAGATCAAAGATGA 10303962 Query 518142 GTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 518201 | || || ||| || | ||||||||| || || |||| || || || || | Sbjct 10303963 GGACGTTGCGCTCTCCTCTTTTGCCTTTATCAAGGCCGTAAGCAATGGCTGCCGCTGTGG 10304022 Query 518202 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 518261 | ||||| || || | | |||||| || || | || ||| ||||| || ||||||| Sbjct 10304023 GCTCATTTATGATGCGGAGAACATTTAGTCCGGAGATCACTCCAGCATCCTTTGTGGCTT 10304082 Query 518262 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTA 518320 | ||||| ||||| ||||| || || || || || || || |||| | || ||| | Sbjct 10304083 GCCTTTGGGAATCATTAAAGTAAGCTGGCACTGTGATGACCGCATTCGACACCCTCTGTC 10304142 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 ||| | | || || ||| | |||||||| || | ||| || ||||| | ||| Sbjct 10304143 CCAGAA-AGGCCTCGGCTATTTCTCTCATTTTAACCAAGACCATCGAGGAAATCTCTTCA 10304201 Query 518381 GGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 518440 || | || ||| ||| || ||| || | | | || || | Sbjct 10304202 GGACAGAATGTCTTCATTTCTCCTTTGTATTCCACCTGGACTTTGGGCTTTCCGTTGTCG 10304261 Query 518441 TTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 518500 || || || || || |||||| |||||| || || || || |||||| ||| | Sbjct 10304262 TTGATCACCTTGAAGGGCCAGAGTTTCATGTCAGACTGGACCACCAGGTCATCAAACCTT 10304321 Query 518501 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATAT 518560 || ||||| | ||||| |||||||| || || ||||| || || || || |||| | Sbjct 10304322 CTTCCAATGAGCCGTTTGGCATCAAAGATCGTGTTGGTGGGGTTCATGGCGACTTGGTTC 10304381 Query 518561 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 518620 ||||| |||||||| || || ||||| || ||||| | || || |||||||| Sbjct 10304382 TTGGCAGCATCTCCGATGAGCCTCTCTGTGTCGGTAAAGGCCACGTAGCTGGGAGTTGTC 10304441 Query 518621 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 | || ||||||||||| ||||||||||| ||||| |||| || | || || |||||| Sbjct 10304442 CTGTTGCCTTGATCATTGGCAATAATTTCCACTTTTCCATGCTGGAAGACCCCGACACAA 10304501 Query 518681 CTAAAAGTTGTTCCTAAATCAATACCAAT 518709 | || || || | |||||| ||||| Sbjct 10304502 GAGTAGGTGGTGCCCAGATCAATGCCAAT 10304530 >seq35 Length=438384 Score = 105 bits (116), Expect = 5e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| || ||||| || || || ||| | |||| |||||||||||||||||||| Sbjct 271234 CAAAAACTGTGTTGGTAGGGTTCATGGCAACCTGATTCTTGGCTGCATCTCCAATCAGCC 271175 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 || || ||||| || | ||||| || || || | || ||||| ||||| |||| Sbjct 271174 TCTCAGTATCTGTGAAAGCCACATAGCTGGGTGTGGTCCTGTTGCCTTGGTCATTGGCAA 271115 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||||||||| |||| || | ||||| |||||| | || ||||| | ||| | Sbjct 271114 TGATTTCAACTTTGCCATGCTGGAACACACCAACACAAGAGTAGGTGGTTCCAAGATCGA 271055 Query 518703 TACCAA 518708 | |||| Sbjct 271054 TTCCAA 271049 Score = 95.1 bits (104), Expect = 9e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || || |||||||| | |||||| |||||||||||||| || || | ||||||| Sbjct 271866 TTCTTGTCCAGCCCATACGCGATAGCAGCTGCAGTTGGTTCATTGATTATACGCAAAACA 271807 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| || | || ||||| || ||||| || | || || || || || || Sbjct 271806 TTGAGGCCAGAGATGGTGCCAGCATCCTTGGTGGCCTGACGCTGGGAGTCATTGAAGTAA 271747 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| || || || || |||| Sbjct 271746 GCAGGTACTGTGATCACAGCAT 271725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780685042722208