Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq13 156 5e-33 seq11 86.0 7e-12 >seq13 Length=33524197 Score = 156 bits (172), Expect = 5e-33 Identities = 950/1496 (64%), Gaps = 66/1496 (4%) Strand=Plus/Minus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || || | | || || |||| ||| || |||||| Sbjct 17856182 CTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGAC 17856123 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 |||| |||||||| | || || | |||||||| | ||||| | || | Sbjct 17856122 AATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGAT 17856063 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || |||||||| || || ||||| || |||| || || Sbjct 17856062 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAG 17856003 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 106079 ||||| | | || | || ||| ||||| || | | |||||| | | Sbjct 17856002 GCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 17855943 Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAACC 106137 | | || || || ||||||| || | || || | |||||| |||| | ||| || Sbjct 17855942 GGTCGGCGTCTTCT-CCCACATGTCGTACTGGAGAATGCCCTTGCTGACGGGCGAG--CC 17855886 Query 106138 CTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 106197 ||| | ||||| |||| || | || | || | || ||||| |||||||||| || Sbjct 17855885 CTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGC 17855826 Query 106198 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 106257 ||| || ||||| || ||||| | || | | || |||||| || || | Sbjct 17855825 GTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGAACGG 17855766 Query 106258 GTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 106316 || || ||| || || || | || || ||||| || || || | || || || |||| Sbjct 17855765 GT-GCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGT 17855707 Query 106317 GTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTC 106373 | ||| | || ||| | | | | ||| || || || | || |||| |||| Sbjct 17855706 GACGCTTGTTGGACGT---CTCGGCTTCAGGGACCGGGTAGTAGTTGATGTCGATGATCT 17855650 Query 106374 GGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGC 106433 ||| || ||||| | | ||| |||| || || | | || ||||| | Sbjct 17855649 TGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCC 17855590 Query 106434 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 106493 | |||| |||| ||| | |||||||| || |||| ||||| || ||| || Sbjct 17855589 G---CTCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCT 17855533 Query 106494 CATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCA 106553 ||||||| |||||||| | | || || || | ||| | || ||||| |||| Sbjct 17855532 CATCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGATTGCTGCATTTGATCGTGCCCA 17855473 Query 106554 AATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 106613 ||||| ||||| ||||| ||||||| || |||||||||||||||||||||||||| | Sbjct 17855472 GGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGG 17855413 Query 106614 TCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTG 106672 | || ||||| |||| || || || | ||| | | | ||| || ||| | || Sbjct 17855412 TTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCT-TTACCACCTTCTTC 17855354 Query 106673 GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTC 106731 ||| || ||| ||| || | |||||||| || |||||||| ||| | || || Sbjct 17855353 ACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCC-CAGCACTC 17855295 Query 106732 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCT--CCTCAACC 106789 | || || || || | ||||| | | ||||| | || | ||| || Sbjct 17855294 GTCTAGCCCAGGACACTCGCTGGGACACATCAAGGACCA--GTCCTGGTTGCTCTCCACT 17855237 Query 106790 CGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCT 106849 | ||||||||| ||||| || ||||||| || | || |||||||| | ||| Sbjct 17855236 CTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGATCTCTGGCTCTCTGCTCC 17855177 Query 106850 TCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTC 106908 || | ||| ||| || | | ||| ||||| || | | || |||||| ||||| Sbjct 17855176 TCCTTTCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGCTC 17855118 Query 106909 AAGATAGACTGCGA------TAGATCCCTT-TCGACGCCCAGCTTGATTTACATAGCGCG 106961 || || | |||| | || ||| | | ||||| || | || ||||| | Sbjct 17855117 CAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCC----TGGTCGACGTAGCGAG 17855062 Query 106962 CTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCC 107021 | ||| ||| | || | ||||| || | | || | || | || || || || Sbjct 17855061 CCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCC-- 17855004 Query 107022 GAATACGAGATTTATTGGCTCTCACATC-AT-GGATG---------TGCATCCCAATACC 107070 | ||| || ||| || | || || ||||| || || || || Sbjct 17855003 -----GGCGATGTA---GCT-TCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCC 17854953 Query 107071 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 107130 ||||| |||| || || | || |||| | | || || ||||||| || | ||| Sbjct 17854952 GCCAGCGGACTTGGAAATGAGAGCGCACTGCTTCAGGGTGTCATAGATGCCTTCGATGCT 17854893 Query 107131 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCA 107188 ||| ||||| |||||| |||||||| ||||||| |||||| | ||| || || || Sbjct 17854892 GTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTG--GTCCCGGCG 17854835 Query 107189 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTC 107247 ||||||||||| || | ||||| ||||| || | | |||| || ||| ||||| Sbjct 17854834 TTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGAGGTTGTAGGTCTC 17854776 Query 107248 CAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 | | | | || |||||| ||||||||| || | | ||| | ||| | ||||| Sbjct 17854775 GATGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACTGACACCCTCATGAGCATGT 17854720 >seq11 Length=28875558 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 |||| || | | ||| ||||| || ||| || |||||||||||||| || | ||||| Sbjct 15203443 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 15203384 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||| ||| || ||||| ||| ||||| || |||||||| || |||||||| || || Sbjct 15203383 TCAGCCAGTAGATAGCAGCA-AATGAGCCCGAGAAGAAAATCCCCTCCACTGCTGCGAAA 15203325 Query 117412 GCAAAAAGGCGCTC 117425 || | ||| ||||| Sbjct 15203324 GCCACAAGACGCTC 15203311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589960386664320