Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq14 122 6e-23 seq12 105 4e-18 >seq14 Length=28338960 Score = 122 bits (134), Expect = 6e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | | ||| | ||| | ||| |||||| || || || ||||| || Sbjct 16346542 CCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGAC 16346483 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| ||||||||||| || || | |||||||| | || Sbjct 16346482 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 16346423 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||| || ||||| ||||||| | || | || | || ||| || Sbjct 16346422 ATGCCCTCCTTATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACC 16346363 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | ||| |||||||| || ||||| ||||| |||||||||||||| || Sbjct 16346362 TCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 16346313 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||| | ||| ||||||||| || || ||||| || ||| | || |||| || Sbjct 16342754 AACAAGGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATCCTC 16342695 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||||||| || ||||| || || | |||||||| | || | |||||||| || Sbjct 16342694 CAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTG 16342635 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 || || ||||||| | || | |||| || ||| || || | ||| |||||||| Sbjct 16342634 GATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTT 16342575 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || || || |||||||||||| Sbjct 16342574 GCCGGTGAGGGTTTTGACGAAGATCTGCATA 16342544 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 16346752 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 16346693 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||||||||| || | | |||||||| | || | |||||||| || Sbjct 16346692 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 16346633 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 16346632 ATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 16346573 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| || ||||||||||| Sbjct 16346572 CCGGTGAGGGTCTTGACGAAGATCTGCAT 16346544 Score = 102 bits (112), Expect = 5e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || |||||||| Sbjct 16346962 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 16346903 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | |||||||| || ||||| || || || Sbjct 16346902 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCAC--AT 16346845 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | || ||| || || | ||| |||||||| || ||||| ||||| | Sbjct 16346844 TCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGA 16346785 Query 34969 CAAAGATCTGCATA 34982 | |||||||||||| Sbjct 16346784 CGAAGATCTGCATA 16346771 Score = 84.2 bits (92), Expect = 1e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||||||||| || || | |||||||| | || | |||||||| || Sbjct 16341314 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 16341255 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | || | || ||| || || | ||| ||||||| Sbjct 16341254 ATCTTGGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTT 16341197 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || ||||| || ||||||||||||||||| || Sbjct 16341196 TGCCGGTGAGGGTTTTCACAAAGATCTGCATCTT 16341163 >seq12 Length=26439574 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | | | |||| ||| | ||| || ||||| ||||| |||||||| Sbjct 2383323 CCTCCCCTGAGACGGAGCACCAGGTGGACGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 2383264 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| ||||||||||| || ||||| || |||| |||||||| | | Sbjct 2383263 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGCTGGTCAGGAAGA 2383204 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || |||||| ||| ||| | || | |||| || ||| || Sbjct 2383203 ATGCCTTCTTTATCCTGAATCTTTGCTTTCACGTTCTCAATGGTATCACTGGGCTCCACC 2383144 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 || | ||| ||||| || || ||||| || ||||| || |||||||| ||| Sbjct 2383143 TCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTTC 2383093 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| ||| | || |||| ||||||||||| || ||||| Sbjct 2383515 TCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAG 2383456 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| |||||||| | | | || || || || |||||| || ||| Sbjct 2383455 ATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTC 2383396 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || ||||| || |||||| Sbjct 2383395 TCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACA 2383336 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 2383335 AAAATCTGCAT 2383325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324622648485504