Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq13 109 6e-19 seq11 82.4 9e-11 >seq13 Length=33524197 Score = 109 bits (120), Expect = 6e-19 Identities = 454/710 (64%), Gaps = 6/710 (1%) Strand=Plus/Minus Query 47943 CATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCG 48002 || ||||| | |||||||| || |||| || | || || | |||| || ||| Sbjct 17855500 CAGAGATTGCTGCATTTGATCGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCG 17855441 Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAA 48062 |||||||| ||||| | || || || ||||| |||| || || ||||| | | ||| Sbjct 17855440 TCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAG 17855381 Query 48063 ACAGTCCTAGCCTTTATAACAG-CTCTAGCTTTATTATCATGTTCGTATTTAGTATATAA 48121 | | ||||||| || || | | | | || | || ||| | || || | Sbjct 17855380 AGCTGCTGCGCCTTTACCACCTTCTTCACCCTCCCT-TCCTTCTCATATCTGGTGTAGAG 17855322 Query 48122 CTTCTCAAATTCATCCCCATA-CACATTATCTAACCCAGGACATTCATTAGGACACATCA 48180 |||||| || || || || | ||| | |||| ||||||||| || | |||||||||| Sbjct 17855321 CTTCTCGAACTCCTCTCCCCAGCAC-TCGTCTAGCCCAGGACACTCGCTGGGACACATCA 17855263 Query 48181 ATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA-AAGAGCT 48239 | ||||| |||| | | | ||||| |||| || | || || ||||| ||| | Sbjct 17855262 AGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGT 17855203 Query 48240 ATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAG 48299 | ||| | ||| || | ||| | || || || || | ||| | || || || || ||| Sbjct 17855202 AGAAA-AGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 17855144 Query 48300 TCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTA 48359 || | | || ||||| || || | || || || | | || |||| || || Sbjct 17855143 TCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTG 17855084 Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || || || || | || | || || ||||| |||||||| | ||| ||||| | || Sbjct 17855083 CCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCG 17855024 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | || ||||| || | || || ||||| | | || || || | | Sbjct 17855023 TTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCC 17854964 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | || || || || || || || || ||||| ||| | || ||||| ||||| || Sbjct 17854963 ACGCCGATCCCGCCAGCGGACTTGGAAATGAGAGCGCACTGCTTCAGGGTGTCATAGATG 17854904 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAA 48599 ||||| || || || || |||| | || || || || |||| ||||| | Sbjct 17854903 CCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTG 17854844 Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGA 48649 || || | || || | || ||||| || || | ||||| ||||| || Sbjct 17854843 GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGA 17854794 >seq11 Length=28875558 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| | | | || || ||||| |||||||| |||||||| || ||||||||||| Sbjct 15204878 CATCACTCCGAATCTCTGGTACTCGGCTACTCTTTTCTCAAAGAAGTTTGTTTTTCCCTC 15204819 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATATTTTTT 18769 | || || | ||||| || ||||| ||||||| ||||| || | |||| Sbjct 15204818 AAGAGAAATGGACTCCATGAAGTCAAAAGGATTTTCCACATTGTAAACCTTTT 15204766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562089351035520