Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq7 181 9e-40 seq12 118 9e-21 seq14 109 4e-18 seq35 104 2e-16 seq16 100 2e-15 >seq7 Length=31413364 Score = 181 bits (200), Expect = 9e-40 Identities = 399/591 (68%), Gaps = 8/591 (1%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | || ||||| || |||||| || || | || |||| ||||| Sbjct 10304530 ATTGGCATTGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATGGAAAAGTG 10304471 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||||||||||||||||||||| ||||| || ||||| || || | || || || Sbjct 10304470 GAAATTATTGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCTTTACCGAC 10304411 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || || | | || ||||| || || | |||| | | || || ||||| || Sbjct 10304410 ACAGAGAGGCTCATCGGAGATGCTGCCAAGAACCAAGTCGCCATGAACCCCACCAACACG 10304351 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 || |||||||| ||||| | ||||||||||| ||| |||| | || ||| | || Sbjct 10304350 ATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCCAGTCTGAC 10304291 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT--A 550292 ||||| | ||||| ||| | | | || | ||||| || | | | || | | Sbjct 10304290 ATGAAACTCTGGCCCTTCAAGGTGATCAACGACAACGGAAAGCC-CAAAGTCCAGGTGGA 10304232 Query 550293 CTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGA 550352 | | ||||| | || ||| | || ||| | ||||| || ||||| || | | Sbjct 10304231 AT-ACAAAGGAGAAATGAAGACATTCTGTCCTGAAGAGATTTCCTCGATGGTCTTGGTTA 10304173 Query 550353 AAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTG 550412 |||||| | ||| |||| || ||| | || || || || |||| || || || | Sbjct 10304172 AAATGAGAGAAATAGCCGAGGCCTTTCTGGGACAGAGGGTGTCGAATGCGGTCATCACAG 10304113 Query 550413 TACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTG 550472 | ||||| || |||||||| || ||| | ||||| || || ||||||||| || | | Sbjct 10304112 TGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAGTGATCTCCG 10304053 Query 550473 GACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 |||| |||||||| || || || ||||| || || || || || |||| || || |||| Sbjct 10304052 GACTAAATGTTCTCCGCATCATAAATGAGCCCACAGCGGCAGCCATTGCTTACGGCCTTG 10303993 Query 550533 ATAAA--CATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 ||||| || || || ||| | || || |||||||||||| ||| || Sbjct 10303992 ATAAAGGCA-AAAGA-GGAGAGCGCAACGTCCTCATCTTTGATCTTGGTGG 10303944 Score = 149 bits (164), Expect = 5e-30 Identities = 436/667 (65%), Gaps = 10/667 (1%) Strand=Plus/Minus Query 551913 ACTGCTTGCGAAAGAGCCAA-ACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGT 551971 || |||||||| ||||| || | || || | || || | ||||| | | ||||| | Sbjct 10303756 ACAGCTTGCGAGAGAGCAAAGAGGACCT-TGTCCTCCAGCACTCAGGCAAGCATTGAGAT 10303698 Query 551972 AGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGA 552031 || ||| | |||||||| ||||| | | | || | || | |||||| || || || Sbjct 10303697 TGACTCACTCTTTGAGGGCATTGACTTTTACACCTCAATCACAAGGGCCCGCTTCGAGGA 10303638 Query 552032 TATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTC 552091 | || || ||||| || |||| | || ||||| || | | || |||| | Sbjct 10303637 GCTCAACTCAGACCTCTTCAGGGGAACACTGGAGCCAGTTGAGAAGGCCCTACAAGATGC 10303578 Query 552092 AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCC 552151 ||| | ||||||||||| | || ||| |||| || |||||||| ||||||||||| || Sbjct 10303577 TAAGCTGGATAAATCCAAGATCCAAGAAGTTGTCCTAGTTGGTGGCTCTACAAGAATCCC 10303518 Query 552152 TAAAATTCGCGAAATG----TTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTG 552207 ||||| | ||| | | || ||| |||||||||| | | |||| | || Sbjct 10303517 CAAAAT---CCAAAAGCTCCTGCAGGACTT-CTTCAATGGTAGAGAGCTAAACAAGAGCA 10303462 Query 552208 TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGAC 552267 | || || ||||| || || |||||||| || || | || || ||||| || || Sbjct 10303461 TCAACCCTGATGAAGCGGTGGCCTATGGCGCAGCCGTCCAGGCTGCTATCCTCATGGGTG 10303402 Query 552268 AAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTT 552327 | ||| ||||| | ||| || | | || | ||||| |||| | || || || Sbjct 10303401 ACACTTCAGAAAATGTCCAAGATTTACTGCTCCTGGATGTGGCTCCCTTGTCGCTGGGCA 10303342 Query 552328 TAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTA 552387 | || |||| || || ||||||| ||||||| | |||| || || || || | Sbjct 10303341 TTGAGACAGCCGGTGGCGTTATGACACCTCTTATCAAGCGAAACACCACCATCCCCACGA 10303282 Query 552388 AAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTT 552447 | | ||| | || || ||||| || ||||| || | | || ||||| | | Sbjct 10303281 AGCAGACTCAGATCTTCTCCACGTACTCGGATAACCAGCCAGGAGTCCTGATTCAGGTCT 10303222 Query 552448 TTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAG 552507 || || || ||| | || || || || |||| || || | ||| | | | Sbjct 10303221 ACGAGGGTGAGAGAGCCATGACAAAGGACAACAATCTCCTGGGGAAGTTTGAGCTCTCGG 10303162 Query 552508 GTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCA 552567 || ||||||||||||| | || || || || || |||||||| || |||||||| |||| Sbjct 10303161 GTCTTCCTCCTGCTCCCAGAGGCGTGCCACAGATCGAAGTTACCTTTGATATCGACGCCA 10303102 Query 552568 ATGGAAT 552574 |||| || Sbjct 10303101 ATGGCAT 10303095 >seq12 Length=26439574 Score = 118 bits (130), Expect = 9e-21 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||||||||| || || || | ||| ||| | ||| || ||||| || | || Sbjct 2383318 CCTGAGACGGAGCACCAGGTGGACGGTGGACTCCTTCTGG--ATGTTGTAGTCCGACAGG 2383261 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || ||||| || ||||| || ||||| ||||| |||||| |||| Sbjct 2383260 GTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGCTGGTCAGGAAGAATG 2383201 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||||||||| ||||| ||| ||| || |||||| |||||| || | | || || Sbjct 2383200 CCTTCTTTATCCTGAATCTTTGCTTTCACGTTCTCAATGGTATCACTG-GGCTCCACCTC 2383142 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| || ||||| |||||||| ||||| Sbjct 2383141 CAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 2383097 Score = 100 bits (110), Expect = 2e-15 Identities = 118/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||| || ||||| || ||||| || ||||| ||||| |||||| |||| |||||||| Sbjct 2383480 ATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTT 2383421 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAA 563437 ||| ||||| ||| || || |||||| |||||| || | | || || || || | Sbjct 2383420 ATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTG-GGCTCCACCTCCAGGGTGA 2383362 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| || ||||| || ||||| ||||| Sbjct 2383361 TGGTCTTCCCAGTGAGGGTTTTCACAAAAATCTGCAT 2383325 >seq14 Length=28338960 Score = 109 bits (120), Expect = 4e-18 Identities = 160/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 |||||||||||| ||||| || ||||| |||||| |||||||| |||| || || Sbjct 16342766 CCTGAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGAGAGGGT 16342707 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | ||| || || ||||| || ||||| || || || ||||| ||||| || || || Sbjct 16342706 GCGGCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 16342647 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431 || ||||| || ||||| ||| || |||||| || ||| || | | || || | Sbjct 16342646 CTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCACTG-GGCTCCACCTCCA 16342588 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || | ||||| || || || ||||| ||||| || |||||| Sbjct 16342587 GGGTGATGGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCATA 16342544 Score = 93.3 bits (102), Expect = 3e-13 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| |||||||| ||||| || ||||| |||||| |||||||| |||| || || Sbjct 16346537 CCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGT 16346478 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | |||||| || || ||||||||||| || || || ||||| ||||| || || || Sbjct 16346477 GCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 16346418 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431 || ||||| || || || ||| || |||||| || || || | | || || | Sbjct 16346417 CTCCTTATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCGCTG-GGCTCCACCTCCA 16346359 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | ||||| || || || || || || || || ||||| Sbjct 16346358 GGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 16346316 >seq35 Length=438384 Score = 104 bits (114), Expect = 2e-16 Identities = 137/187 (73%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | |||||||| || |||||||||||| | || |||| ||||||||| Sbjct 271051 GGAATCGATCTTGGAACCACCTACTCTTGTGTTGGTGTGTTCCAGCATGGCAAAGTTGAA 271110 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||| ||||| ||||| || || || ||||| ||||||| || ||| Sbjct 271111 ATCATTGCCAATGACCAAGGCAACAGGACCACACCCAGCTATGTGGCTTTCACAGATACT 271170 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAATACT 550174 || | |||| |||||||| || |||| |||| || || |||||||| || Sbjct 271171 GAGAGGCTGATTGGAGATGCAGCCAAGAATCAGGTTGCCA-TG--AACCCTACCAACACA 271227 Query 550175 ATTTTTG 550181 |||||| Sbjct 271228 GTTTTTG 271234 Score = 98.7 bits (108), Expect = 8e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || ||||| || || || |||||||| || ||||| || || || |||| Sbjct 271725 ATGCTGTGATCACAGTACCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAGGATG 271784 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| || |||||| | ||||| ||||||||||| ||||| ||||| Sbjct 271785 CTGGCACCATCTCTGGCCTCAATGTTTTGCGTATAATCAATGAACCAACTGCAGCTGCTA 271844 Query 550518 TTGCATATGGACTTGATAA 550536 | || ||||| || || || Sbjct 271845 TCGCGTATGGGCTGGACAA 271863 >seq16 Length=33199742 Score = 100 bits (110), Expect = 2e-15 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || || || || || |||||||| || |||||||| || ||||| | Sbjct 19124882 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCCCAGCGTCAAGCCACCAAAGACG 19124823 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| || ||||| ||||| |||||||||||||| || || || || Sbjct 19124822 CTGGTACCATCTCTGGCCTCAATGTGCTTCGCATTATCAATGAACCCACAGCCGCAGCCA 19124763 Query 550518 TTGCATATGGACTTG 550532 ||||||| || |||| Sbjct 19124762 TTGCATACGG-CTTG 19124749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029149615676320