Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq20 150 1e-31 seq9 96.9 3e-15 >seq20 Length=26385442 Score = 150 bits (166), Expect = 1e-31 Identities = 134/168 (80%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||||| |||||||||| || || |||||||| ||||| || ||||| |||||||| || Sbjct 22734431 CATGTCCTTGTACTCTGCACCAAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGATC 22734490 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||||| ||||| | ||||||| ||||||| ||||| | ||| ||||||||||| Sbjct 22734491 CCCCTCCTCCCTCTCTGTGAAGCCCAGGTTGTCCAGGAAGTCACGGGACCCGTTGGCGTC 22734550 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||||||||| || || ||||| || ||||| |||| ||||| || || Sbjct 22734551 CCAGATCTTCACTCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC 22734598 Score = 136 bits (150), Expect = 3e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || || | ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 22733549 AGTCCCGTAATGTGTGCAATCATGTAGGTGAGAAGTGCGTAGCTGGCGATGTTGAAAGGC 22733608 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| | || | |||||| |||||||| || ||||| ||||||| Sbjct 22733609 ACGCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 22733668 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGA 30031 ||||| |||||||| | || |||||| || || || ||||||| Sbjct 22733669 ACGTAGAACTGACAGAGGGCGTGGCAGGGGGGCAGCGCCATGA 22733711 Score = 82.4 bits (90), Expect = 6e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 29800 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 29859 ||||| ||||| ||||||| ||||||||||||||||||||||| ||||||||||| || Sbjct 22733393 TTCAGAGGTTCGACGTGATTGAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAAGTCA 22733452 Query 29860 CCCGG 29864 || || Sbjct 22733453 CCGGG 22733457 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30100 |||||||||||||||| |||| |||||| || | |||||| ||||| ||| ||||| || Sbjct 22733795 CTTTGGGGTTCCAGGCACACATGATGATTCGTCGGTCTTCCGGGTTTTTCTTGATGGTGT 22733854 Query 30101 CCACGGCGTTTTGCAGCTGATCCACCCC 30128 | | | |||||||||||| || || || Sbjct 22733855 CGATGATGTTTTGCAGCTGGTCGACACC 22733882 >seq9 Length=34117797 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 112107 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 112166 || |||||||||||| | ||| |||||| | |||| || || ||||| || |||||||| Sbjct 30695142 CTTCCTGCTGAGGACGATGTTGATCCTGCCGTTCAGTGGCCTGTTCTTCTCTGGGATGGA 30695201 Query 112167 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 |||||| ||||| || ||||| || ||||| |||| | ||||| Sbjct 30695202 GAACCAGGTCTTCCTGCCCATGATTACCACATTCTTCCTGCCT 30695244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408603815285264