Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq14 113 4e-20 seq12 84.2 2e-11 >seq14 Length=28338960 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | ||| | || ||||| |||||||| || |||||||| || | | Sbjct 16342771 CCACCCCTGAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGAG 16342712 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| || || || ||||| |||| | ||| || || || || Sbjct 16342711 AGGGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 16342652 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || ||||| || ||||| ||| || | || | |||||| | ||||| Sbjct 16342651 ATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 16342592 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| ||||||||||| | ||||| || || |||||||| Sbjct 16342591 TCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 16342545 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | ||| | || ||||| ||||||||||| |||||||| || | Sbjct 16346542 CCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGAC 16346483 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| ||||| || ||||| |||| | ||| || || || || Sbjct 16346482 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 16346423 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || ||||| || || || ||| || | || | ||||| | ||||| Sbjct 16346422 ATGCCCTCCTTATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACC 16346363 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || || |||| ||||||||||| | || || ||||| ||||||||| || Sbjct 16346362 TCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTTT 16346312 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | ||| | || ||||| || || || || || ||||| |||| Sbjct 16346998 CCACCCCTAAGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 16346939 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| ||||| || ||||| |||| | ||| || || || || Sbjct 16346938 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 16346879 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || ||||| || || || || ||| | || | ||||| | ||||| Sbjct 16346878 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 16346819 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| ||||||||||| | || || || || |||||||| Sbjct 16346818 TCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 16346772 >seq12 Length=26439574 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331 ||| || || || || || ||||| || | | || | | |||| |||| || || || Sbjct 2383522 GGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCC 2383463 Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 ||||| |||| | ||| || || || |||||||||||||||| ||||| ||| || Sbjct 2383462 AGCAAAGATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCCTGAATCTTTGCCTT 2383403 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 || | || | || ||| | ||||| || || |||| || || || || | || Sbjct 2383402 CACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGT 2383343 Query 101452 TTTTACAAATATCTGCATG 101470 ||| ||||| ||||||||| Sbjct 2383342 TTTCACAAAAATCTGCATG 2383324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396265031548176