Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq13 345 8e-90 seq21 105 1e-17 seq14 87.8 3e-12 seq11 87.8 3e-12 >seq13 Length=33524197 Score = 345 bits (382), Expect = 8e-90 Identities = 865/1296 (67%), Gaps = 40/1296 (3%) Strand=Plus/Minus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTC-AGGGC 221424 || ||||||| ||||||||| ||| | | |||| | |||| | || || ||||| Sbjct 17855887 CCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCA-GCTGGCCTCCAGGGC 17855829 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484 ||||||||||||||||| |||||| ||||||| || ||| ||||| ||| Sbjct 17855828 GGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGAA 17855769 Query 221485 GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCT 221544 || |||| || ||| |||||||||| ||||| || ||||| ||||| ||||| Sbjct 17855768 CGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCT 17855709 Query 221545 GTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATT 221604 ||| | | ||||||| | | ||||| || || || || |||||| |||||| | || Sbjct 17855708 GTGACGCTTGTTGGACGTCTCGGCTTCAGGGACCGGGTAGTAGTTGATGTCGATGATCTT 17855649 Query 221605 GTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAA 221664 ||||||||| ||| || || || || |||||||| | | ||| | Sbjct 17855648 GTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAA-----A 17855594 Query 221665 CTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACA 221724 || | | | |||| | ||| ||| ||||| | | ||||||||| || Sbjct 17855593 GTCCGCTCTGGCGTGACGT------ACAT----GTTGAGGGCGATGGAGGCCAGGTTGCA 17855544 Query 221725 CACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTT 221784 ||||||||||| |||||| |||| |||| | | ||| || ||||| |||||||| || Sbjct 17855543 GACGGCCACCTCATCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGATTGCTGCATTT 17855484 Query 221785 GATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAA 221844 ||| || ||||||| || || || ||| | ||| |||||||||||||||||| | Sbjct 17855483 GATCGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTA 17855424 Query 221845 GGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCA 221903 ||| || || || ||| | | | | || || |||||| | ||| || | | Sbjct 17855423 GGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTG-CTGCGCCTTTA 17855365 Query 221904 CCGTCCTCTTGACTGCACCCTCGGT--CTTTTCATACCCGGTATAGAGCATGTCAAACTT 221961 || | |||| ||||||| | ||| ||||| | ||| |||||| | || |||| Sbjct 17855364 CCACCTTCTT-----CACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTC 17855310 Query 221962 TTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTT 222021 || || | |||||| || || |||||| | ||||||||||| ||||| || Sbjct 17855309 CTCTCCCCAGCACTCGTCTAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTG 17855250 Query 222022 GTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCT 222081 |||| | || |||| |||||| ||||| |||||||||| || | || |||||||| Sbjct 17855249 GTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGATCTCT 17855190 Query 222082 GGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGC 222141 || | |||||||||| || |||| ||| |||| |||| || || || | ||| Sbjct 17855189 GGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAA 17855130 Query 222142 GTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 ||||||||||||||| || | ||| | || ||||||| ||||||||| ||||| || || Sbjct 17855129 GTGCCACGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGAC 17855070 Query 222202 CATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTT 222261 | || |||| | | | || |||| |||| ||||||||| ||||| Sbjct 17855069 GTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTT 17855010 Query 222262 GGTGCCCTTAATGTACGCACCGCCGGCCCTC--AGGTTACTGGCAGACATGCCGATACCA 222319 |||||| ||||| || | ||| | || | | || | | || |||||| || Sbjct 17855009 GGTGCCGGCGATGTA-GCTTC-CCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCG 17854952 Query 222320 CCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAG 222379 || ||| || || || | ||||| ||| || ||||| |||||| || || | Sbjct 17854951 CCAGCGGACTTGGAAATGAGAGCGCACTGCTTCAGGGTGTCATAGATGCCTTCGATGCTG 17854892 Query 222380 TCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTA 222439 || ||||| | | ||||| || || |||| ||| | | ||| | |||||| Sbjct 17854891 TCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTG 17854832 Query 222440 AACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACG 222499 || || || ||| |||||| || || | | |||| || | ||| ||||| | | Sbjct 17854831 AAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATG 17854772 Query 222500 ACTCTGGCGATGTTGTCCCCGTGAATCTGCA-TGGCGCATCTCATGTACATGTACTGGGG 222558 | | |||||| |||||| ||| | || | | |||||| ||||| ||| || Sbjct 17854771 GCGGCGTCGATGTCTCGCCCGTGGATCCCAACTGACAC-CCTCATGAGCATGTGCTGCGG 17854713 Query 222559 CCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAA 222615 || || |||| ||| | || || |||||||| || |||||||||||||| Sbjct 17854712 CCGCTCGGCCAC-TTTCCCGTTGATCT--TCAGCAGGTAGGAGCGCTCCAGAGTCTTGAA 17854656 Query 222616 CCCAAAGTAGTTG-AGGTCAAAGTCTCTGCCGTGAA 222650 || ||| ||||| ||| ||| |||||| ||| || Sbjct 17854655 GCCGAAGAAGTTGTAGGAGAAA-TCTCTGTCGTAAA 17854621 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || || | ||| ||| |||||| | ||| ||| || | Sbjct 17856179 CATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACAAT 17856120 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| ||||| || |||||||| | ||| | ||| ||| ||| |||||| Sbjct 17856119 CTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGA 17856060 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| || ||||||||||| |||| |||||| || Sbjct 17856059 CTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCT 17856000 Query 221245 GTT 221247 ||| Sbjct 17855999 GTT 17855997 >seq21 Length=25773841 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||| || || |||||||| ||||| ||| |||||||| || |||||||||| Sbjct 1860790 TGGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCT 1860849 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || |||||||| ||| ||| |||||||||||||||| | | Sbjct 1860850 GGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCCGAG 1860909 Query 26003 ACGAGG 26008 |||||| Sbjct 1860910 ACGAGG 1860915 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 |||||||||||||| ||||| ||||| || |||| |||||||||||||||||||| ||| Sbjct 1861717 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAG 1861776 Query 26305 AGGGTCGGCGACTATCA 26321 ||||||| || || || Sbjct 1861777 CGGGTCGGGGAGTACCA 1861793 >seq14 Length=28338960 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || ||| |||||||| || ||||||| || || || ||||| | | |||||| || Sbjct 9811792 CTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTAGCTCTCTGCTCTTC 9811851 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 || |||| ||| |||| |||||||||||||| | |||||| |||||||||||||| Sbjct 9811852 TTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCCACGGCTCCAG 9811911 Query 222157 ATAGAC 222162 || || Sbjct 9811912 GTACAC 9811917 >seq11 Length=28875558 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| || || || || || || |||||||| || || ||| || || ||||| Sbjct 15203308 GGGGAGCGTCTTGTGGCTTTCGCAGCAGTGGAGGGGATTTTCTTCTCGGGCTCATTTGCT 15203367 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || |||| |||||| ||| ||| || |||||| || || || |||||||| ||| Sbjct 15203368 GCTATCTACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTC 15203427 Query 25993 ATCAGCAGGGACGAGG 26008 || ||||||||||||| Sbjct 15203428 ATTAGCAGGGACGAGG 15203443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928812661969920