Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq7 174 1e-37 seq35 102 5e-16 seq16 86.0 4e-11 >seq7 Length=31413364 Score = 174 bits (192), Expect = 1e-37 Identities = 373/553 (67%), Gaps = 6/553 (1%) Strand=Plus/Minus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| | ||||| |||||| | || || || ||| |||||| | || | || ||| Sbjct 10304538 GAATATCCATTGGCATTGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATG 10304479 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| ||||| ||||||||||| ||||| || || ||||| || || || | | Sbjct 10304478 GAAAAGTGGAAATTATTGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCT 10304419 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 |||| || || || || || ||||||||||| || | |||| || || || Sbjct 10304418 TTACCGACACAGAGAGGCTCATCGGAGATGCTGCCAAGAACCAAGTCGCCATGAACCCCA 10304359 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || || |||||||| ||| | | ||||| | | |||||||| |||| Sbjct 10304358 CCAACACGATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCC 10304299 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATAT 474621 | ||||| ||| | ||||| || |||||||| || | || || || | | Sbjct 10304298 AGTCTGACATGAAACTCTGGCCCTTCAAGGTGATCAACGACAACGGAAAGCCCAAAGTCC 10304239 Query 474622 AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 || | |||||| ||| |||| || ||| | || ||| | ||||| || ||||| Sbjct 10304238 AGGTGGAATACA--AAGGAGAAATGAAGACATTCTGTCCTGAAGAGATTTCCTCGATGGT 10304181 Query 474682 TTTAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 || | ||||||| | ||| | |||| | | ||| ||||| || | |||| | Sbjct 10304180 CTTGGTTAAAATGAGAGAAATAGCCGAG-GCCTTTCTGGGACAGAGGGTGTCGAATGCGG 10304122 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | || || || ||||| || ||||||||||| ||| | ||||| || || ||||| ||| Sbjct 10304121 TCATCACAGTGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAG 10304062 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 || | || || |||||| | || || || ||||| || ||||| || || |||||| Sbjct 10304061 TGATCTCCGGACTAAATGTTCTCCGCATCATAAATGAGCCCACAGCGGCAGCCATTGCTT 10304002 Query 474861 ATGGTCTTGATAA 474873 | || |||||||| Sbjct 10304001 ACGGCCTTGATAA 10303989 Score = 118 bits (130), Expect = 7e-21 Identities = 409/627 (65%), Gaps = 16/627 (3%) Strand=Plus/Minus Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 |||| |||| || || ||||| || ||||| | | | || || |||||||| | Sbjct 10303704 TTGAGATTGACTCACTCTTTGAGGGCATTGACTTTTACACCTCAATCACAAGGGCCCGCT 10303645 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCA 475667 | || || | || || ||||| || |||| | || || ||||| | | || Sbjct 10303644 TCGAGGAGCTCAACTCAGACCTCTTCAGGGGAACACTGGAGCCAGTTGAGAAGGCCCTAC 10303585 Query 475668 GAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 |||| |||| || || ||||| |||| |||| ||| |||| || || || || || ||| Sbjct 10303584 AAGATGCTAAGCTGGATAAATC-CAAGATCCAAGAAGTTGTCCTAGTTGGTGGCTCTACA 10303526 Query 475727 AGAATTCCAAAAATAAGAGAAATGCT--TTCATCATATTTT-AATGGTAAAAAGTTAAAT 475783 ||||| || ||||| ||| ||| | || | | || ||||||| | || |||| Sbjct 10303525 AGAATCCCCAAAATCC---AAAAGCTCCTGCAGGACTTCTTCAATGGTAGAGAGCTAAAC 10303469 Query 475784 GAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843 | || | || ||||||||||| || || ||||| || || ||||| || ||||| | Sbjct 10303468 AAGAGCATCAACCCTGATGAAGCGGTGGCCTATGGCGCAGCCGTCCAGGCTGCTATCCTC 10303409 Query 475844 TCAGGTCAATCAGACGAGAAACTAAATAATATT--GTACTTGTTGACGTAACTCCACTTT 475901 ||| | || ||||| | || ||| | || | || || |||| | | Sbjct 10303408 ATGGGTGA--CACTTCAGAAAATGTCCAAGATTTACTGCTCCTGGATGTGGCTCCCTTGT 10303351 Query 475902 CATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTA 475961 | | || |||| |||| || || ||||||| |||||| | |||| || | | Sbjct 10303350 CGCTGGGCATTGAGACAGCCGGTGGCGTTATGACACCTCTTATCAAGCGAAACACCACCA 10303291 Query 475962 T-CCCATGCA-AAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 | |||| | | | | ||| | | || ||||| || || ||||| || || || Sbjct 10303290 TCCCCACGAAGCAGACTCAGA--TCTTCTCCACGTACTCGGATAACCAGCCAGGAGTCCT 10303233 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTT 476079 || || ||| || ||||| ||| | || || || || || || || | || Sbjct 10303232 GATTCAGGTCTACGAGGGTGAGAGAGCCATGACAAAGGACAACAATCTCCTGGGGAAGTT 10303173 Query 476080 TAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGA 476139 | | || ||| ||||||||||||||||||| || || || || |||||||| ||||| Sbjct 10303172 TGAGCTCTCGGGTCTTCCTCCTGCTCCCAGAGGCGTGCCACAGATCGAAGTTACCTTTGA 10303113 Query 476140 TATTGATGCAAATGGTATTCTTAATGT 476166 ||| || || ||||| || || || || Sbjct 10303112 TATCGACGCCAATGGCATCCTAAACGT 10303086 >seq35 Length=438384 Score = 102 bits (112), Expect = 5e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||| || ||| | ||||| || ||| |||||| | ||| | || |||| ||| Sbjct 271045 GCAGTTGGAATCGATCTTGGAACCACCTACTCTTGTGTTGGTGTGTTCCAGCATGGCAAA 271104 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||||||||||||||| || || || ||||| ||||| |||| || Sbjct 271105 GTTGAAATCATTGCCAATGACCAAGGCAACAGGACCACACCCAGCTATGTGGCTTTCACA 271164 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 || ||||| || ||||||||||| || || |||| | ||| Sbjct 271165 GATACTGAGAGGCTGATTGGAGATGCAGCCAAGAATCAGGTTGC 271208 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || || || || || || || ||||| || || ||||| || || || |||| Sbjct 271725 ATGCTGTGATCACAGTACCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAGGATG 271784 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | || | || || |||||||| ||||| || ||||||||||| ||||| || Sbjct 271785 CTGGCACCATCTCTGGCCTCAATGTTTTGCGTATAATCAATGAACCAACTGCAGCTGCTA 271844 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 | || ||||| || || ||||| Sbjct 271845 TCGCGTATGGGCTGGACAAGAA 271866 >seq16 Length=33199742 Score = 86.0 bits (94), Expect = 4e-11 Identities = 104/137 (76%), Gaps = 6/137 (4%) Strand=Plus/Minus Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG--AACTTTTAATCTTGAA- 476089 ||||| |||||| | || |||||||| || | ||||| || ||| ||| ||| Sbjct 19122638 GAAGGGGAAAGAGCCATGACCAAAGATAACAATAT-CTTGGGGAAATTTGAAT--TGACT 19122582 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||| || ||||||||||||||||| ||||| || || || || ||||| |||||||| Sbjct 19122581 GGTATCCCGCCTGCTCCCAGAGGAGTCCCTCAGATCGAGGTGACCTTTGACATTGATGCC 19122522 Query 476150 AATGGTATTCTTAATGT 476166 || || ||||| || || Sbjct 19122521 AACGGCATTCTCAACGT 19122505 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | || |||||| | || || |||||| ||||| | | | | || |||| ||| Sbjct 19125558 GCAGTAGGCATTGATCTGGGCACCACTTACTCATGTGTGGGTATCTTCCAGCATGGCAAA 19125499 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || ||||||||||||||||| || ||||| || ||| ||||| | || || Sbjct 19125498 GTGGAGATCATTGCCAATGACCAAGGGAACAGAACCACCCCAAGCTATGTGGCCTTCACA 19125439 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480 || || || || |||||||||||||| || Sbjct 19125438 GACACAGAGAGGCTGATTGGAGATGCTGCCAA 19125407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268060467049664