Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 >seq6 Length=31529174 Score = 131 bits (144), Expect = 2e-25 Identities = 569/882 (65%), Gaps = 36/882 (4%) Strand=Plus/Plus Query 160085 GTCAACGTCTTC---GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCA 160141 |||| || |||| ||| || |||||||| || || || || | ||| |||| ||| Sbjct 24758049 GTCATCGACTTCTGGGTCAAACTTATTTGCAAAGAGGTGCTG--CTGTCTC-AGGAGCCA 24758105 Query 160142 GTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGG 160201 | | ||| |||| ||| |||| || |||| | ||| || | || || Sbjct 24758106 CAGGAGGTCGCCGGCGCCGTACACACACACGGCTCTCCTGTAGGTCCCCATACATGGATA 24758165 Query 160202 GTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTAT 160261 |||| |||||||||| |||||| ||| | || |||||| ||| | ||| | Sbjct 24758166 GTACGGAGCTCCTTTTTTCACGTCTCCTGTTAAATAAGACCACTTGACAGCTCGGGCAAG 24758225 Query 160262 CGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGG 160321 ||| |||||| || ||||| |||||| | |||| | | || ||||| || Sbjct 24758226 AGCCATCATGTCCGACGTGTCATATTTGCTGTTTGGGGGCATTGATCCAGGAACCGAGGA 24758285 Query 160322 CATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTC 160381 ||| | ||| ||||||||||||| ||||||||| || ||||| ||||| || ||| || Sbjct 24758286 CATCCTCTGCAGGGTGGCCCACATGTGTTCGTCTGGACTGTATGTGTCTTTTTCCCACTC 24758345 Query 160382 CATGAACTCTCCGATTAACCT----GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCA 160437 |||||| | || | ||||| || | ||| | || | || ||| || | | Sbjct 24758346 CATGAA-TTTC---TGAACCTCTCCGTTCTGCATCAAGTATTTCACAAAGGCCCTAGAGA 24758401 Query 160438 CGACAAAGTA---CGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTG-TCTTTG 160493 | |||||||| ||||| || ||||| || || || || ||||||| | | ||| Sbjct 24758402 CCACAAAGTAGGCTGCGCTTCCTGAGAACATTGGGCTGCTGATGGGCGGCGGGCTTTTTC 24758461 Query 160494 TCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACC 160553 || || | |||| | || || || | | ||| | | || ||| | |||| Sbjct 24758462 TCATGTC---TGTT-CTGATGACGCCGTTGGCGACATTGTGGTGGTACTGCCAGC-GACC 24758516 Query 160554 -ATCTTG--TGCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTC 160610 ||||| | ||| || ||| || || | ||||| || | ||| |||| Sbjct 24758517 TTTCTTGGAGACACTGG--TGACTTCAGTTTCCATGCTGTTCCTCCCATTGAGGACTTTC 24758574 Query 160611 AGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATC 160670 || | | || ||||| ||| || |||| |||||||| || || || || | Sbjct 24758575 AGAGCCATCACCATCTCCCTGTTGGTTTTGATGGGAAAGTCTGTCCCACAGGTATTCAGA 24758634 Query 160671 ACGTACTTCCATTTCGCGCTCAG-GTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTG 160729 | ||| ||||| | | |||| || |||| || ||||||| || | ||| ||||| Sbjct 24758635 AGGTATTTCCACTGAAC-TTCAGAGTGCAGCAGATCTTTCATGCAGTTCAGATCAGCCTG 24758693 Query 160730 CACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATC 160789 || | | ||| ||||| ||||| || | |||| ||||||||| ||||| || || Sbjct 24758694 TACTCTGGACCATGAAGCATACACAACACTTTCTAATTTACTGGCTACAAAAACATTGGG 24758753 Query 160790 GAAACACGACACGATTCCCACCACCGCC---AGAAAGAACATCTTATCCGCCTTTCGGTC 160846 || || || || ||| || ||| ||| |||| ||| | | ||| |||| Sbjct 24758754 AAAGCAGGAAACTATTTCCTTCACAGCCCTGTGAAAAGACAGGGAA---GACTTCTGGTC 24758810 Query 160847 CACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACAT 160906 | || | ||| || | |||||| || || || || | | || | | || ||||| Sbjct 24758811 AATATGGATGCAGTAGATGTTCTGTGGAGCATAAATAGATCGTAGGAGTCGTTCAAACAT 24758870 Query 160907 CTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAA 160948 ||||||||| | |||||||| || ||||| || || ||||| Sbjct 24758871 CTCTATCTTCTTGTGGATCACCATGGAGTATGCAATGGGAAA 24758912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577199228215680