Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq13 178 2e-39 seq11 86.0 7e-12 >seq13 Length=33524197 Score = 178 bits (196), Expect = 2e-39 Identities = 959/1503 (64%), Gaps = 66/1503 (4%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||| |||| || | || ||||||||| |||||| || | | | Sbjct 17854713 CCGCAGCACATGCTCATGAGGGTGTCAGTTGGGATCCACGGGCGAGACATCGACGCCGCC 17854772 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || |||| | | || ||||| ||||| | || |||||||| Sbjct 17854773 ATCGAGACCTACAACCTCCTGTCGGAGAAGTG-GTTCACCCACGCCTCTCCGACCCTCTT 17854831 Query 75331 CAATGCTGGTAC--ACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||| || || || ||| | |||||| ||||||| |||||||| |||||| ||||| Sbjct 17854832 CAACGCCGGGACCAACC--GGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGAC 17854889 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| ||| | || ||||||| || || | | |||| || | || || |||| ||| Sbjct 17854890 GACAGCATCGAAGGCATCTATGACACCCTGAAGCAGTGCGCTCTCATTTCCAAGTCCGCT 17854949 Query 75449 GGGGGTATTGG---------GATGCACATCC-AT-GATGTGAGAGCCAATAAATCTCGTA 75497 || || || || || ||||| || || | || ||| || ||| | Sbjct 17854950 GGCGGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACGGGA-AGC---TACATCGC--- 17855002 Query 75498 TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 75557 || || || || | || | || | | || ||||| | || | ||| || Sbjct 17855003 ----CGGCACCAACGGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAACA 17855058 Query 75558 CAGCGCGCTATGTAAATCAAGCGGGGCGTC-GCAAG------GGGTCCATCGCGGTCTAC 75610 | || ||||| | || | | ||||| | |||| ||| || |||| | ||| Sbjct 17855059 CGGCTCGCTACG----TCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTAC 17855114 Query 75611 TTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAG-TTACGACTCAACCAAGGTGA 75669 |||| || ||||| ||| | | || ||||| ||| | | || ||| ||| | Sbjct 17855115 CTGGAGCCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGA-AGAACACAGGAAA 17855173 Query 75670 CGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAA 75729 || ||| | |||||||| || | || ||||||| || ||||| |||||||| Sbjct 17855174 GGAGGAGCAGAGAGCCAGAGATCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGAA 17855233 Query 75730 GCGGGT--TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTC 75787 | | || ||| | || | ||||| | | ||||| | || || || || Sbjct 17855234 GAGAGTGGAGAGCAACCAGG--ACTGGTCCTTGATGTGTCCCAGCGAGTGTCCTGGGCTA 17855291 Query 75788 TCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAG 75846 ||| || | ||| |||||||| || |||||||| | ||||| |||| || || Sbjct 17855292 GACGAGTGCTG-GGGAGAGGAGTTCGAGAAGCTCTACACCAGATATGAGAAGGAAGGGAG 17855350 Query 75847 AGCCAATGCGACTGTACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGG 75905 | || | ||| || ||| | | | ||| | || || || | || ||||| | Sbjct 17855351 GGTGAAGAAGGTGGTA-AAGGCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCG 17855409 Query 75906 AGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGA 75965 | || || || || || ||||| |||||||| ||||| |||| |||||| ||||| |||| Sbjct 17855410 AAACCGGGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGAAGA 17855469 Query 75966 ATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGG 76025 | |||| || ||||| || ||||| |||||||| | | |||||||| |||| Sbjct 17855470 ACCTGGGCACGATCAAATGCAGCAATCTCTGCACGGAGGTGGTGGAGTACACCAGCAAGG 17855529 Query 76026 ATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGA 76085 ||||| ||| || ||||| |||| || |||||||| | ||| |||| |||| Sbjct 17855530 ATGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAG- 17855588 Query 76086 CTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAA 76145 || ||||| || | | || || |||| ||| | | ||||| || | Sbjct 17855589 --CGGACTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCA 17855646 Query 76146 ACCGAGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGC 76202 || |||| |||| || | || || || ||| | | | | ||| || | || Sbjct 17855647 ACAAGATCATCGACATCAACTACTACCCGGTCCCTGAAGCCGAG---ACGTCCAACAAGC 17855703 Query 76203 GACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG-TGCCGC 76261 | ||||| || || || | || || || ||||| || || | || || || ||| || Sbjct 17855704 GTCACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATGCGGC 17855763 Query 76262 TACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTAT 76321 || | || || |||||| || | | || | ||||| || ||||| || Sbjct 17855764 -ACCCGTTCGAAAGCCCCGAAGCCCAGCTGCTCAACATCCAGATCTTCGAGACCATCTAC 17855822 Query 76322 CACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTT 76381 ||||| |||||||||| || || || | || | || | || |||| ||||| | Sbjct 17855823 CACGCCGCCCTGGAGGCCAGCTGCGAGCTCGCCGCAGAGCTCGGCCCCTACGAGACGTAC 17855882 Query 76382 GAGGGTTCTCCCGCGTC-CCAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA 76439 ||||| ||| | |||| |||||| | || |||| || ||||||| || || || Sbjct 17855883 GAGGG--CTCGCCCGTCAGCAAGGGCATTCTCCAGTACGACATGTGGG-AGAAGACGCCG 17855939 Query 76440 AGC-TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 76498 | | | | |||||| | | || ||||| ||| | | || | | ||| Sbjct 17855940 ACCGACCTGTGGGACTGGAAGCTGCTGAAGGAGAAGATCGCCAAACATGGCGTGAGGAAC 17855999 Query 76499 AGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 76558 || || || |||| || ||||| || || |||||||| || ||| |||| || || || Sbjct 17856000 AGCCTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAG 17856059 Query 76559 TGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTC 76618 | | | || | ||||| | ||||||||| | || || | || ||||| Sbjct 17856060 TCCATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAG 17856119 Query 76619 ATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATG 76678 ||||||||| |||||| |||| ||||| | | || || || ||| | |||| ||| Sbjct 17856120 ATTGTCAACCCTCACCTCCTCAAGGACCTGACGGAGCGCGGCCTGTGGAACGAGGAGATG 17856179 Query 76679 AAG 76681 ||| Sbjct 17856180 AAG 17856182 >seq11 Length=28875558 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GC 65135 ||||| ||| | || || || |||||||| || |||||||| || ||||| ||| || Sbjct 15203311 GAGCGTCTTGTGGCTTTCGCAGCAGTGGAGGGGATTTTCTTCTCGGGCTCATT-TGCTGC 15203369 Query 65136 TATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTAT 65195 ||| || ||| |||||||| | || |||||||||||||| || ||| || ||||| || Sbjct 15203370 TATCTACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTCAT 15203429 Query 65196 TTCCCGAGATGAGG 65209 | | | || |||| Sbjct 15203430 TAGCAGGGACGAGG 15203443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596548958691840