Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq13 197 1e-45 seq14 107 2e-18 seq12 93.3 4e-14 >seq13 Length=33524197 Score = 197 bits (218), Expect = 1e-45 Identities = 952/1492 (64%), Gaps = 59/1492 (4%) Strand=Plus/Minus Query 138540 GTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGT 138599 ||| |||||| ||||| | | ||| | || |||||||| ||||| ||||| || |||| Sbjct 17856089 GTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGA 17856030 Query 138600 CGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTC 138659 ||| || |||||| ||||| || || |||| | || || ||| || Sbjct 17856029 CGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTC 17855970 Query 138660 CTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAA 138719 ||| ||| | ||||||||||| ||| | || | || | |||||| |||||||| | Sbjct 17855969 CTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAG 17855910 Query 138720 CATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAA 138779 || ||| || |||| ||| ||||||| ||||| || | |||| || | Sbjct 17855909 AATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAG 17855850 Query 138780 CTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAA 138839 |||| ||| ||||| || || | | ||| || || ||| ||||| ||||||| Sbjct 17855849 CTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAG 17855790 Query 138840 TCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTG 138899 |||| |||| ||| ||| |||| || | || |||| ||||||||||| || || Sbjct 17855789 CTGGGCTTCGGGGCTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTG 17855730 Query 138900 CACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTC---GATAGG 138956 ||||| | |||| || | || ||| || |||| | ||||||| || || Sbjct 17855729 GACGCCGATCCCGATCGGCCTGTGACGCTTGTTGGACG---TCTCGGCTTCAGGGACCGG 17855673 Query 138957 ATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGT--CGTATGC 139014 || ||||| | |||||||| ||||| | ||| ||||| ||||| || || | || Sbjct 17855672 GTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGC 17855613 Query 139015 TTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTG 139074 || | || ||| | || || | || ||| ||||| ||| ||||| Sbjct 17855612 CAGCTTC--TTGAAGTCGAAAGT--CCGCTCTGGCGT----GACGT--ACA----TGTTG 17855567 Query 139075 ACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATT 139134 | || ||||| | |||||| || ||||| || || | | |||| || || | Sbjct 17855566 AGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCATCCTTGCTGGTGTACTCCACCACC 17855507 Query 139135 TCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTA 139194 || | || | ||| || || |||||||| || | || | || ||||| || | ||| Sbjct 17855506 TCCGTGCAGAGATTGCTGCATTTGATCGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTG 17855447 Query 139195 CAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAAT 139254 ||||| || ||||| ||||| || || || || ||||| || | ||| || ||| Sbjct 17855446 CAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATG--- 17855390 Query 139255 TTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCT--CGTACTTTT 139312 | || || | ||| || || ||| ||| || | || | | ||| | Sbjct 17855389 GCGTACCAGAGC--TGCTGCGCCTTTAC-CAC-----CTTCTTCACCCTCCCTTCCTTCT 17855338 Query 139313 C---------GTAGAGTTCGTCGAA-TCGT-TCACC-GTAGGCGTCAGAAAGATCGCGAC 139360 | |||||| | ||||| || | || || | | |||| || | ||| Sbjct 17855337 CATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTC---TAGCCCAGGAC 17855281 Query 139361 ACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGAT 139420 ||| | |||||||| | ||||| | ||| || || | | |||||||||| | Sbjct 17855280 ACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGT 17855221 Query 139421 CCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTAC 139480 | || |||||||| ||| | | | ||| | || ||| || ||| || |||| Sbjct 17855220 CAGGGATCCACAAGGCGTAGAAAAGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCT 17855161 Query 139481 GTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTG 139540 |||| | ||||| || || ||||| |||||| || ||||| || ||||| | | Sbjct 17855160 TCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGG 17855101 Query 139541 CGCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCA 139597 | || | || ||||| || || ||||||| || | | || ||| | || | || Sbjct 17855100 CCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCA 17855041 Query 139598 ACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCG-AGCT 139656 |||||| ||| ||| | | | |||||||||| |||| || | || | | Sbjct 17855040 GCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCT-TCCCGTCGAT 17854982 Query 139657 CGGACGTCATGT-ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATC 139715 |||| | || | || | |||||| ||||| | | ||||| || | | |||| | Sbjct 17854981 CGGATG-CAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGAGCGCACT- 17854924 Query 139716 GCGT-AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATG 139774 || | | || || || || ||| ||||||||||||| ||| | || ||| ||||| Sbjct 17854923 GCTTCAGGGTGTCATAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGC 17854864 Query 139775 ACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACA 139834 || || ||||| | || || ||||| || || || ||| ||||| |||||| Sbjct 17854863 TGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACC 17854804 Query 139835 TTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATAC 139894 | | ||||| | | ||| || ||||||||| | || || | |||||||| | Sbjct 17854803 ACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCGGCGTCGATGTCTCGCCCGTGGATCC 17854744 Query 139895 CGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttt 139954 | || || || | ||| ||||| || || ||| |||||||| || | ||| || Sbjct 17854743 CAACTGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCA 17854684 Query 139955 tCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 ||| || | ||| || |||||| |||| ||| | | ||| |||||| Sbjct 17854683 GCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATC 17854632 >seq14 Length=28338960 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| ||||| || || || || || || ||| | Sbjct 16346316 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGC 16346375 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| || || || || || || || || || Sbjct 16346376 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 16346435 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | |||| || || || Sbjct 16346436 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAT 16346495 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || ||||| ||||| || || ||| Sbjct 16346496 ATCCAAAAAGAATCCACCCTCCAC 16346519 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| ||||| || || || || || || ||| | Sbjct 16346772 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGC 16346831 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || || || || || Sbjct 16346832 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 16346891 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | |||| || || ||| Sbjct 16346892 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 16346951 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| || || || ||| Sbjct 16346952 ATCCAGAAGGAGTCCACCCTCCAC 16346975 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || ||||| ||||| || || || || || || ||| Sbjct 16342545 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGT 16342604 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||| ||||| || || || || || || || || || Sbjct 16342605 GACACCATTGAGAACGTCAAAGCCAAA-ATCCAGGATAAGGAGGGCATCCCCCCTGACCA 16342663 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || ||||||||||||||| | | | | || || || || Sbjct 16342664 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAGGATGGCCGCACCCTCTCTGACTACAA 16342723 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 || || || ||||| || || ||| Sbjct 16342724 TATCCAGAAAGAATCCACCCTCCAC 16342748 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || ||| Sbjct 16346544 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16346603 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||| || || || || || || || || || Sbjct 16346604 GACACCATTGAGAACGTCAAGGCCAAA-ATCCAGGATAAGGAGGGCATCCCCCCTGACCA 16346662 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||||||| || |||||||| ||| | | | |||| || || || Sbjct 16346663 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 16346722 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 16346723 CATCCAGAAGGAGTCCACCCTTCACCTGGT 16346752 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || ||||| ||||| || || || || || || ||| Sbjct 16341165 GATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAG 16341224 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| || || || || || || || || || Sbjct 16341225 CGACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCA 16341284 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCT 24852 || | ||||||||||||| || ||||| Sbjct 16341285 GCAGAGGCTGATCTTTGCCGGAAAGCAGCT 16341314 >seq12 Length=26439574 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || || || || || || || || || ||| Sbjct 2383096 GATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAG 2383155 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || ||| |||||| || || |||||||| || | ||| || || Sbjct 2383156 TGATACCATTGAGAACGTGAAAGCAAAGATTCAGGATAAAGAAGGCATTCTTCCTGACCA 2383215 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | |||||||| || ||||||||||| ||| | | | |||| || || || Sbjct 2383216 GCAGAGACTCATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAA 2383275 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || || | ||| ||||| | || | | |||||| Sbjct 2383276 CATCCAGAAGGAGTCCACCGTCCACCTGGTGCTCCGTCTCAGGGGAGGC 2383324 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || || || || || || || || || ||| Sbjct 2383325 ATGCAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 2383384 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||| || || |||||||| || | ||| || || Sbjct 2383385 GATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCTTCCTGACCAG 2383444 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || ||||||||||| ||| | | | |||| || || ||| Sbjct 2383445 CAGAGACTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAAC 2383504 Query 24884 ATTCAAAAGGAATCGAC 24900 || || ||||| || || Sbjct 2383505 ATCCAGAAGGAGTCCAC 2383521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449882033543040