Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq14 159 2e-34 >seq14 Length=28338960 Score = 159 bits (176), Expect = 2e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||||| |||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 16346755 AGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 16346696 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||||||||| ||||||| | |||||||| | || | |||||||| || Sbjct 16346695 TCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 16346636 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| |||||| | || | ||| ||| ||| || || | ||| |||||| Sbjct 16346635 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 16346576 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||||||||| || |||||||||||| Sbjct 16346575 TTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 16346543 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | || || ||||| | |||| || || || || || ||||| || Sbjct 16346542 CCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGAC 16346483 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||||||||| |||||||| | |||||||| | || Sbjct 16346482 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 16346423 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | |||||||| || | || || ||||||| | || | || ||| ||| || Sbjct 16346422 ATGCCCTCCTTATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACC 16346363 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| ||||| || || ||||||||||| ||||||||||||||| Sbjct 16346362 TCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 16346315 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | |||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 16346983 AGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 16346924 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| ||||| |||||||| | |||||||| | || | |||||||| || Sbjct 16346923 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 16346864 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || ||| ||| || || | ||| |||| Sbjct 16346863 TGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGG 16346806 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || ||||||||||| || ||||||||||| Sbjct 16346805 TTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 16346772 Score = 118 bits (130), Expect = 7e-22 Identities = 170/240 (71%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 34743 AATCATTTCCT-----CCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAAT 34797 |||||||| || ||||| | | || || ||||| | |||| || ||||| || Sbjct 16342784 AATCATTTACTGGCCACCCCTGAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGAT 16342725 Query 34798 GTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTG 34857 || ||||| || ||| |||| |||| ||||| || || || || |||||||| | || Sbjct 16342724 ATTGTAGTCAGAGAGGGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTG 16342665 Query 34858 CTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTC 34917 |||||| | || | |||||||| || | ||||| ||||||| | || | || Sbjct 16342664 CTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTC 16342605 Query 34918 ATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||| ||| || || | ||| ||||| || || |||||||| || || ||||||||||| Sbjct 16342604 ACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 16342545 Score = 82.4 bits (90), Expect = 5e-11 Identities = 110/151 (73%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||||||||| |||||||| | |||||||| | || | |||||||| || | Sbjct 16341314 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 16341255 Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946 || || ||||| || || || | || ||| ||| || || | ||| ||||| | Sbjct 16341254 ATCTTGGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTT 16341197 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || |||||||| || |||||||||||||| Sbjct 16341196 TGCCGGTGAGGGTTTTCACAAAGATCTGCAT 16341166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325681812753392