Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq7 217 1e-50 seq35 102 6e-16 >seq7 Length=31413364 Score = 217 bits (240), Expect = 1e-50 Identities = 933/1468 (64%), Gaps = 14/1468 (1%) Strand=Plus/Plus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || |||| | ||| || || || |||||||| || | |||||| || ||||| || Sbjct 10303070 TTTGTCGACGGCGGACACGTTTAGGATGCCATTGGCGTCGATATCAAAGGTAACTTCGAT 10303129 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 || || || ||||| ||||||| || | || | | ||| | ||||| ||| Sbjct 10303130 CTGTGGCACGCCTCTGGGAGCAGGAGGAAGACCCGAGAGCTCAAACTTCCCCAGGAGATT 10303189 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595 || || || || | || ||||||||| | | || || ||| | | || || Sbjct 10303190 GTTGTCCTTTGTCATGGCTCTCTCACCCTCGTAGACCTGAATCAGGACTCCTGGCTGGTT 10303249 Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCAA 281654 ||| || || || | || | |||| | | | | || || || ||||||| | | Sbjct 10303250 ATCCGAGTACGTGGAGAAGA-TCTGAGTCTGCTTCGTGGGGATGGTGGTGTTTCGCTTGA 10303308 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 ||| | ||||||| ||||| ||||| || | || || || | |||| ||||| | Sbjct 10303309 TAAGAGGTGTCATAACGCCACCGGCTGTCTCAATGCCCAGCGACAAGGGAGCCACATCCA 10303368 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 || | | || ||| | ||||| ||| | ||| | || ||||| || || | | Sbjct 10303369 GGAGCAGTAAATCTTGGACATTTTCTGAAGTGTCACCCATGAGGATAGCAGCCTGGACGG 10303428 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 | || ||||| || || ||||||||||| || | | | ||||| | | ||||||||| Sbjct 10303429 CTGCGCCATAGGCCACCGCTTCATCAGGGTTGATGCTCTTGTTTAGCTCTCTACCATTGA 10303488 Query 281835 AAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 281894 | || | || || | | | || || || | | || || ||||||| |||| Sbjct 10303489 AGAAGTCCTGCAGGAGCTTTTGGATTTTGGGGATTCTTGTAGAGCCACCAACTAGGACAA 10303548 Query 281895 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 281954 ||| || | || ||||||||||| || | ||| || | || ||||| || || | Sbjct 10303549 CTTCTTGGATCTTGGATTTATCCAGCTTAGCATCTTGTAGGGCCTTCTCAACTGGCTCCA 10303608 Query 281955 GACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 282014 | | || || | |||||| || || ||||| || || || || ||| | Sbjct 10303609 GTGTTCCCCTGAAGAGGTCTGAGTTGAGCTCCTCGAAGCGGGCCCTTGT--GATTGAGGT 10303666 Query 282015 -TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 282072 || || ||||| || || || | || |||| ||||| | | ||||| || || Sbjct 10303667 GTAAAAGTCAATGCCCTCAAAGAGTGAGTCAATCTCAATGCTTGCCTGAGTGCTGGAGGA 10303726 Query 282073 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTG 282128 | | | || || | || || ||||| | ||||| | | ||| | | ||| Sbjct 10303727 CAAGGTCCTCTTTGCTCTCTCGCAAGCTGTGCGCAGTCTCCTCACAGCTCTCTTGTTCTG 10303786 Query 282129 ATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGAC 282188 |||| || | || | ||||| || || || || ||| | | || | | Sbjct 10303787 GCTGATG----TCCTTCTTGTGCTTTCTTTTAAACTCCTCCACAAAGTGGTTGACCATTC 10303842 Query 282189 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 282248 | || |||||||| || || || | | || | || | || ||| | || | || | Sbjct 10303843 GGTTGTCAAAATCCTCCCCGCCAAGGTGTGTGTCCCCAGCTGTGGCTTTCACCTCAAATA 10303902 Query 282249 GTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAA 282308 || ||||||| | || | | || ||| || || ||||| | |||||| || | Sbjct 10303903 TGCCGTCTTCAATGGTCAGGATGGACACGTCAAAAGTGCCTCCACCAAGATCAAAGATGA 10303962 Query 282309 GTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 | || || ||| || | ||||||||| || || |||| || || || || | Sbjct 10303963 GGACGTTGCGCTCTCCTCTTTTGCCTTTATCAAGGCCGTAAGCAATGGCTGCCGCTGTGG 10304022 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | ||||| || || | | |||||| || || | || ||| ||||| || ||||||| Sbjct 10304023 GCTCATTTATGATGCGGAGAACATTTAGTCCGGAGATCACTCCAGCATCCTTTGTGGCTT 10304082 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTC 282488 | ||||| ||||| ||||| || || || || || || || |||| | || | || Sbjct 10304083 GCCTTTGGGAATCATTAAAGTAAGCTGGCACTGTGATGACCGCATTCGACACCCTCTGTC 10304142 Query 282489 CAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 282548 | | | | || ||| ||| | |||||||| || | ||| || ||||| | ||| | Sbjct 10304143 CCAGAAAGGCCTCGGCTATTTCTCTCATTTTAACCAAGACCATCGAGGAAATCTCTTCAG 10304202 Query 282549 GAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACAT 282608 || | || ||| ||| || ||| || | | | || || | | Sbjct 10304203 GACAGAATGTCTTCATTTCTCCTTTGTATTCCACCTGGACTTTGGGCTTTCCGTTGTCGT 10304262 Query 282609 TAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTC 282668 | || || || || ||||| |||||| || || || || |||||| ||| || Sbjct 10304263 TGATCACCTTGAAGGGCCAGAGTTTCATGTCAGACTGGACCACCAGGTCATCAAACCTTC 10304322 Query 282669 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATT 282728 | ||||| | ||||| |||||||| || || ||||| || || | || |||| | | Sbjct 10304323 TTCCAATGAGCCGTTTGGCATCAAAGATCGTGTTGGTGGGGTTCATGGCGACTTGGTTCT 10304382 Query 282729 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 282788 |||| |||||||| || || ||||| || ||||| | || || |||||||| | Sbjct 10304383 TGGCAGCATCTCCGATGAGCCTCTCTGTGTCGGTAAAGGCCACGTAGCTGGGAGTTGTCC 10304442 Query 282789 GATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAAC 282848 || ||||||||||| ||||||||||| ||||| |||| || | || || |||||| Sbjct 10304443 TGTTGCCTTGATCATTGGCAATAATTTCCACTTTTCCATGCTGGAAGACCCCGACACAAG 10304502 Query 282849 TAAAAGTTGTTCCTAAATCAATACCAAT 282876 | || || || | |||||| ||||| Sbjct 10304503 AGTAGGTGGTGCCCAGATCAATGCCAAT 10304530 >seq35 Length=438384 Score = 102 bits (112), Expect = 6e-16 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| || ||||| || || | ||| | |||| |||||||||||||||||||| Sbjct 271234 CAAAAACTGTGTTGGTAGGGTTCATGGCAACCTGATTCTTGGCTGCATCTCCAATCAGCC 271175 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 || || ||||| || | ||||| || || || | || ||||| ||||| |||| Sbjct 271174 TCTCAGTATCTGTGAAAGCCACATAGCTGGGTGTGGTCCTGTTGCCTTGGTCATTGGCAA 271115 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||||||||| |||| || | ||||| |||||| | || ||||| | ||| | Sbjct 271114 TGATTTCAACTTTGCCATGCTGGAACACACCAACACAAGAGTAGGTGGTTCCAAGATCGA 271055 Query 282870 TACCAA 282875 | |||| Sbjct 271054 TTCCAA 271049 Score = 95.1 bits (104), Expect = 9e-14 Identities = 110/147 (75%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || || |||||||| | |||||| |||||||||||||| || || | ||||||| Sbjct 271866 TTCTTGTCCAGCCCATACGCGATAGCAGCTGCAGTTGGTTCATTGATTATACGCAAAACA 271807 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| || | || ||||| || ||||| || | || || || || || || Sbjct 271806 TTGAGGCCAGAGATGGTGCCAGCATCCTTGGTGGCCTGACGCTGGGAGTCATTGAAGTAA 271747 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 ||||| || || || || |||| |||| Sbjct 271746 GCAGGTACTGTGATCACAGCAT-TGTT 271721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740494502897568