Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq12 140 6e-28 seq14 134 3e-26 seq16 96.9 7e-15 >seq12 Length=26439574 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||| || || | ||| | || || || ||||| || || || || || Sbjct 2383323 CCTCCCCTGAGACGGAGCACCAGGTGGACGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 2383264 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| ||||||||||| ||||| || || || ||| | Sbjct 2383263 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGCTGGTCAGGAAGA 2383204 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| ||||| |||||||||||||| || || ||||| |||||| | || || || Sbjct 2383203 ATGCCTTCTTTATCCTGAATCTTTGCTTTCACGTTCTCAATGGTATCACTGGGCTCCACC 2383144 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || || | || || || || |||||||| Sbjct 2383143 TCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 2383097 Score = 131 bits (144), Expect = 3e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || || ||||| || || || || || || | | || ||||| || ||||| ||| Sbjct 2383521 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 2383462 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| ||||| || || || ||| | || ||||| ||||| ||||||||||| || Sbjct 2383461 GCAAAGATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCCTGAATCTTTGCCTTC 2383402 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 || || ||||| |||||| | || || || |||| || || ||||| || || | || Sbjct 2383401 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTT 2383342 Query 82794 TTTACAAATATCTGCAT 82810 || ||||| |||||||| Sbjct 2383341 TTCACAAAAATCTGCAT 2383325 >seq14 Length=28338960 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| ||||| | ||| || || ||||||||||| ||||| || ||||| Sbjct 16342771 CCACCCCTGAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGAG 16342712 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || ||||| ||||||||||| || || || || || || || Sbjct 16342711 AGGGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 16342652 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| || || || ||||| || || ||||| || ||| | || || || Sbjct 16342651 ATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 16342592 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || ||||| || | || || || || |||||||| Sbjct 16342591 TCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 16342545 >seq16 Length=33199742 Score = 96.9 bits (106), Expect = 7e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 60147 GAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCA 60206 |||| | |||||||| | || || ||||| || || ||| | || ||||||||||||| Sbjct 23917634 GAGCTCTCTGGTGGTATTTCATCTCCAAAGGCATCGAGTACCTGGACACGGTGTTTTTCA 23917693 Query 60207 TACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGT 60266 | || ||||||||||| || ||||| | || | ||||| || || || | || |||| Sbjct 23917694 TTCTGAGGAAAAAGTTCAACCAGGTCACCTTCCTGCACGTCTACCACCACTGCACCATGT 23917753 Query 60267 TTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | || | | ||| | ||||| || ||| | |||||||| || Sbjct 23917754 TCACGCTGTGGTGGATCGGCATCAAGTGGGTGGCCGGAGGACA 23917796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981792379498352