Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq14 109 7e-19 seq25 107 3e-18 seq23 104 3e-17 seq2 104 3e-17 seq17 98.7 1e-15 >seq14 Length=28338960 Score = 109 bits (120), Expect = 7e-19 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 |||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 26511750 TATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 26511809 Query 8715 TTCCCCGACGAGGAG 8729 |||||||||| |||| Sbjct 26511810 TTCCCCGACGGGGAG 26511824 Score = 107 bits (118), Expect = 3e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 26523161 ATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 26523220 Query 8716 TCCCCGACGAGGAG 8729 ||||||||| |||| Sbjct 26523221 TCCCCGACGGGGAG 26523234 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 26511753 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 26511812 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 26511813 CCCGACGGGGAGG 26511825 Score = 102 bits (112), Expect = 1e-16 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 26523160 CATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 26523219 Query 11786 TTCCCCGACGAGGAGG 11801 |||||||||| ||||| Sbjct 26523220 TTCCCCGACGGGGAGG 26523235 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 26511824 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 26511765 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 26511764 TACTAACGAGGA 26511753 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 26523234 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 26523175 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 26523174 TACTAACGAGGA 26523163 >seq25 Length=1457224 Score = 107 bits (118), Expect = 3e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 83705 ATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 83764 Query 8716 TCCCCGACGAGGAG 8729 ||||||||| |||| Sbjct 83765 TCCCCGACGGGGAG 83778 Score = 102 bits (112), Expect = 1e-16 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 83704 CATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 83763 Query 11786 TTCCCCGACGAGGAGG 11801 |||||||||| ||||| Sbjct 83764 TTCCCCGACGGGGAGG 83779 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 83778 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 83719 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 83718 TACTAACGAGGA 83707 >seq23 Length=18084596 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 6976886 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 6976945 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 6976946 CCCGACGGGGAG 6976957 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 6976886 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 6976945 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 6976946 CCCGACGGGGAG 6976957 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 6976957 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 6976898 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 6976897 TACTAACGAGGA 6976886 >seq2 Length=46286544 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 7139698 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 7139639 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 7139638 CCCGACGGGGAG 7139627 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 7139698 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 7139639 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 7139638 CCCGACGGGGAG 7139627 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 26637057 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 26636998 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 26636997 CCCGACGGGGAG 26636986 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 26649050 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 26649109 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 26649110 CCCGACGGGGAG 26649121 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||| Sbjct 7139626 ACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 7139685 Query 139412 ATACTAACGAGGA 139424 ||||||||||||| Sbjct 7139686 ATACTAACGAGGA 7139698 Score = 96.9 bits (106), Expect = 5e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 26637057 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 26636998 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 26636997 CCCGACGGGGAGG 26636985 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 26649050 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 26649109 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 26649110 CCCGACGGGGAG 26649121 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| || | |||| | ||||||||| | ||||||||| Sbjct 11328163 TCCTCGTTAGTATAGTGGTTAGTATCCCYGCTTGTCACGCGGGAGACCAGAGTTCGATTC 11328104 Query 8718 CCCGACGAGGAGCA 8731 || |||| |||||| Sbjct 11328103 CCTGACGGGGAGCA 11328090 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| | ||||||| Sbjct 26636986 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 26637045 Query 139413 TACTAACGAGGATTT 139427 |||||||||||| || Sbjct 26637046 TACTAACGAGGAGTT 26637060 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||| ||||| ||||| |||| |||| || |||||||| ||||||||||| Sbjct 11329458 TCCTCGTTAGTATCGTGGTAAGTATCCCCGCTTGTCACATGGGAGACCAGGGTTCGATTC 11329399 Query 8718 CCCGACGAGGAGCA 8731 || |||| |||||| Sbjct 11329398 CCTGACGGGGAGCA 11329385 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| |||| ||||||||| ||||||||||| Sbjct 11329869 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCTTGTCAGGCGGGAGACCAGGGTTCGATTC 11329810 Query 8718 CCCGACGAGGAGCA 8731 || |||| |||||| Sbjct 11329809 CCTGACGGGGAGCA 11329796 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| | ||||||| Sbjct 26649121 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 26649062 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 26649061 TACTAACGAGGA 26649050 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||| |||| |||||| | ||||||||| | ||||| | |||||| ||||||||| Sbjct 11328092 CTCCCCGTCAGGGAATCGAACTCTGGTCTCCCGCGTGACAAGCRGGGATACTAACCACTA 11328151 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 11328152 TACTAACGAGGA 11328163 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||| |||| |||||||| |||||||| || ||||| |||||||| | ||||| | Sbjct 11329387 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCCATGTGACAAGCGGGGATACTTACCACGA 11329446 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 11329447 TACTAACGAGGA 11329458 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| |||| |||| |||||||| ||||||||| ||||| |||||||| | ||||||| Sbjct 11329798 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCCTGACAAGCGGGGATACTTACCACTA 11329857 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 11329858 TACTAACGAGGA 11329869 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||| |||||| |||| |||| |||| || |||||||| |||||||||| Sbjct 11329459 GTCCTCGTTAGTATCGTGGTAAGTATCCCCGCTTGTCACATGGGAGACCAGGGTTCGATT 11329400 Query 11788 CCCCGACGAGGAG 11800 ||| |||| |||| Sbjct 11329399 CCCTGACGGGGAG 11329387 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||||||||||||||| ||||| || | |||| | ||||||||| ||||||||||| Sbjct 11329665 TCCTCGTTAGTATAGTGGAAAGTATCCCTGCTTGTCACGCGGGAGACCAGGGTTCGATTC 11329606 Query 8718 CCCGACGAGGAGCA 8731 || |||| |||||| Sbjct 11329605 CCTGACGGGGAGCA 11329592 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||||||||||||||||| |||| |||| |||| ||||||||| |||||||||| Sbjct 11329870 GTCCTCGTTAGTATAGTGGTAAGTATCCCCGCTTGTCAGGCGGGAGACCAGGGTTCGATT 11329811 Query 11788 CCCCGACGAGGAG 11800 ||| |||| |||| Sbjct 11329810 CCCTGACGGGGAG 11329798 >seq17 Length=30788009 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||| |||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 8068712 TCCTTGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 8068653 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 8068652 CCCGACGGGGAG 8068641 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||| ||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 8068712 TCCTTGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 8068653 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 8068652 CCCGACGGGGAG 8068641 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||| Sbjct 8068640 ACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 8068699 Query 139412 ATACTAACGAGGA 139424 |||||||| |||| Sbjct 8068700 ATACTAACAAGGA 8068712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652822211569920