Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq13 370 1e-97 seq14 145 7e-30 seq12 113 4e-20 seq21 87.8 2e-12 >seq13 Length=33524197 Score = 370 bits (410), Expect = 1e-97 Identities = 1014/1537 (66%), Gaps = 46/1537 (3%) Strand=Plus/Minus Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290 |||| ||||||| | || || | | || || | ||| ||||| |||| ||||| | Sbjct 17856156 GCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCC 17856097 Query 148291 GCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350 || || | |||||| || ||| || | |||||||||||||||| ||||| | Sbjct 17856096 TGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGG 17856037 Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT- 148409 |||| | |||||||||||| ||| | |||||| ||| | || ||| || ||| Sbjct 17856036 CGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCA---CGCCATGTTTGG 17855980 Query 148410 --ATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGT 148467 || || |||||| | ||||||||| || | ||| ||| | |||||||| Sbjct 17855979 CGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGCGTCTTCTCCCACATGT 17855920 Query 148468 CGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCG 148527 ||||||| |||||||| ||| |||| ||||||||||| ||| || ||| || Sbjct 17855919 CGTACTGGAGAATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCT 17855860 Query 148528 CCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCC 148587 | || || || |||||||| ||||| || ||| ||| ||| || |||||| || || Sbjct 17855859 CTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGA 17855800 Query 148588 TGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGG 148647 ||||||||||| || ||||||| |||| |||| | | | || ||||||| Sbjct 17855799 TGTTGAGCAGCTGGGCTTCGGGGCTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGG 17855740 Query 148648 CAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT 148707 | || ||||| ||||| | || || |||| ||| ||||||| | | || ||| | Sbjct 17855739 CCAGACCCTGGACGCCGATCCCGATCGGCCTGTGACGCTTGTTGGA-CGTCTCG-GCT-T 17855683 Query 148708 C---GAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTG 148764 | || ||| |||| |||| |||||||||||||| || || ||| | ||||| | Sbjct 17855682 CAGGGACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGG 17855623 Query 148765 TAATTCTGCGCAGCAATTCAAAATCGTACTTGTCATCT------ACGATGCATCGGTTCA 148818 | | | |||| | || ||| | | ||| ||| | ||| ||| | Sbjct 17855622 TGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACG-TACAT--GTTGA 17855566 Query 148819 CGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCT 148878 |||||| ||||| || ||||| |||||| ||||||| | | ||||||| || | || Sbjct 17855565 GGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCATCCTTGCTGGTGTACTCCACCACCT 17855506 Query 148879 CGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGC 148938 | | ||| |||||||||||||||||| ||||| |||||| || |||||||| ||||||| Sbjct 17855505 CCGTGCAGAGATTGCTGCATTTGATCGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTGC 17855446 Query 148939 ACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACC 148998 | ||||||||||| |||||||| || || ||||| ||| | || | ||| | Sbjct 17855445 AAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATG--GC 17855388 Query 148999 GATGC--AGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGT 149056 | | || | |||||| || || || | || |||| ||| ||| || Sbjct 17855387 GTACCAGAGCTGCTGCGCCTTTACCACCTTCTTCACCCTCCCTTCCTTCTCATATCTGGT 17855328 Query 149057 ATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCA 149116 || ||| ||||||| |||| || |||| ||||| || || || |||| | || || Sbjct 17855327 GTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCTAGCCCAGGACACTCGCTGGGACA 17855268 Query 149117 CATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAG 149176 ||| | ||||| | || | ||| | |||||| ||||| || || | ||| | Sbjct 17855267 CATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAA 17855208 Query 149177 CGCGTACATGAGGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTG 149234 ||||| | || || | || | ||| || || || |||| ||| | Sbjct 17855207 GGCGTAGAAAAGATCTCTGGCTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCC 17855150 Query 149235 AGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC------C 149288 || | | ||| | ||| |||||||||||| | ||||| |||| || || | Sbjct 17855149 AGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTC 17855090 Query 149289 TTGCGCTTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGT 149348 ||| ||||||||||||||||||| ||| || ||||||| | |||| | ||| || Sbjct 17855089 TTG---TTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGG 17855033 Query 149349 TCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTG 149408 | | || ||| ||||||| || | ||| || || || ||| | | Sbjct 17855032 ACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTTCCCGTCGATCGGATGCAG 17854973 Query 149409 TGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTC 149468 ||| |||||||| ||||| || |||| || ||| ||||| | || || Sbjct 17854972 CTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGAGCGCACTGCTTCAGGGTG 17854913 Query 149469 GAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGC 149528 |||||||| |||||||||||| |||||||| ||||| ||||| | ||| ||| Sbjct 17854912 TCATAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGC 17854853 Query 149529 GGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTC 149588 || || ||||| ||| | ||| || |||||| || || | |||| | Sbjct 17854852 GGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGAC 17854793 Query 149589 ATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCG-CCATGGATGCCTATGGCGAC 149647 | | | ||| | ||||| || ||| ||||| ||| || ||||| || | | || Sbjct 17854792 AGGAGGTTGTAGGTCTCGATGGCGGCGTCGATGTC-TCGCCCGTGGATCCCAACTGACAC 17854734 Query 149648 GCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTT---GTTTCCAATTTTGAGCAAGTA 149704 | ||| ||||| |||||||| ||||| |||||||| ||| || || |||| ||| Sbjct 17854733 CCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTT---GATCTTCAGCAGGTA 17854677 Query 149705 GCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAG 149741 | | || || |||||| |||| ||| | |||||| Sbjct 17854676 GGAGCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAG 17854640 >seq14 Length=28338960 Score = 145 bits (160), Expect = 7e-30 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 16346969 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 16346911 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| ||||| || |||||| || Sbjct 16346910 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCT 16346851 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| |||||||||| || | ||||| |||||||||||| || | Sbjct 16346850 TCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGG 16346791 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 16346790 TCTTGACGAAGATCTGCAT 16346772 Score = 140 bits (154), Expect = 3e-28 Identities = 154/200 (77%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| |||||||| |||||||| || | ||| | | | ||||| ||||| |||| Sbjct 16342742 GGTGGATTCTTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCA-TCCTCCAGCTGTTTGC 16342684 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| ||||| || ||| ||| ||| Sbjct 16342683 CAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT-TTTGGCT 16342625 Query 133582 T-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 | || | ||||| ||||| |||||||||| || | ||||| |||||||||||| || Sbjct 16342624 TTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGG 16342565 Query 133641 GTTTTTACGAAAATCTGCAT 133660 ||||| ||||| |||||||| Sbjct 16342564 GTTTTGACGAAGATCTGCAT 16342545 Score = 132 bits (146), Expect = 5e-26 Identities = 151/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| ||||| || |||||||| || || ||| | | | || || |||||||| | Sbjct 16346513 GGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTTC 16346455 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| ||||| || |||||| | Sbjct 16346454 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCTT 16346395 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| |||||| |||||||||| || | ||||| |||||||||||| || | Sbjct 16346394 TGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGG 16346335 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 16346334 TCTTGACAAAGATCTGCATG 16346315 Score = 125 bits (138), Expect = 7e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 |||||||| || || | || |||| ||||||||| || |||||||| ||||| || | Sbjct 16341314 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 16341255 Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||||| ||||| | ||||| |||||| |||||||||| || | ||||| ||||||| Sbjct 16341254 ATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTG 16341195 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || ||||| || || |||||||| Sbjct 16341194 CCGGTGAGGGTTTTCACAAAGATCTGCAT 16341166 >seq12 Length=26439574 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || ||||| |||| Sbjct 2383294 GGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCA-TCTTCCAGCTGTTTGC 2383236 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| | ||||||||| ||| | |||||||| || || |||||| | Sbjct 2383235 CAGCAAAGATGAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCCTGAATCTTTGCTT 2383176 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || || |||||||||| || | ||||| ||| || || || || | Sbjct 2383175 TCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGG 2383116 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| |||||||||||||| Sbjct 2383115 TTTTCACGAAAATCTGCAT 2383097 Score = 111 bits (122), Expect = 2e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || ||||| |||| Sbjct 2383522 GGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCA-TCTTCCAGCTGTTTGC 2383464 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || | ||||||||| ||| | |||||||| || || |||||| || Sbjct 2383463 CAGCAAAGATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCCTGAATCTTTGCCT 2383404 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || || |||||||||| || | ||||| ||| || || || || | Sbjct 2383403 TCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGG 2383344 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 |||| || |||||||||||| || Sbjct 2383343 TTTTCACAAAAATCTGCATGCCT 2383321 >seq21 Length=25773841 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 120665 CCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCT 120724 ||||||| || || ||||||||||| || |||||||||||||| | |||| || ||| Sbjct 1860915 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1860856 Query 120725 TGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGG 120784 | | |||| |||||||| || || || ||||| | ||||||||| ||| |||| Sbjct 1860855 TCAGCCAGAAGATGGCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 1860796 Query 120785 CGACCA 120790 | |||| Sbjct 1860795 CCACCA 1860790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483404073640320