Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq6 127 2e-24 seq22 84.2 3e-11 >seq6 Length=31529174 Score = 127 bits (140), Expect = 2e-24 Identities = 480/736 (65%), Gaps = 34/736 (5%) Strand=Plus/Plus Query 162285 AGCCTGCATGTCGGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGG 162344 |||| |||||| || ||||| || ||| || |||| | ||||||||| | Sbjct 24758226 AGCCATCATGTCCGACGTGTCATATTTGCTGTTTGGGGGCATTGATCCAGGAACCGAGGA 24758285 Query 162345 CAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTC 162404 || ||||| || || ||||||| ||||||||||||||| || || || || |||||| Sbjct 24758286 CATCCTCTGCAGGGTGGCCCACATGTGTTCGTCTGGACTGTATGTGTCTTTTTCCCACTC 24758345 Query 162405 CATGAACTCCCTGACCGTTTTATCGTATAGAAT---GTAAGAGACGTAGGACCTGGTCAC 162461 |||||| | | ||| | | | ||| | || ||| || ||| ||| | || Sbjct 24758346 CATGAATTTC-TGAACCTCTC--CGTTCTGCATCAAGTATTTCACAAAGGCCCTAGAGAC 24758402 Query 162462 AATAAAGTACGC---GCTACCAGAAAACACGGGTATGCGTATAGGAGG-GGGCTCTTTGT 162517 | |||||| || ||| || || |||| || ||| || || || ||||| ||| | Sbjct 24758403 CACAAAGTAGGCTGCGCTTCCTGAGAACATTGGGCTGCTGATGGGCGGCGGGCTTTTTCT 24758462 Query 162518 CTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCA 162577 | || | || ||| || || | |||| ||| | | ||| || | Sbjct 24758463 CATGTCT-GTTCTGATGACG---CCGTTGGCGACATTGTGGTGGTACTGCCA----GCGA 24758514 Query 162578 TCTTACTGGTAGACG--GGTG--TTCGGTCTCTAGACTGTTACGACCCCCCA---AGGCC 162630 ||| || | |||| |||| ||| || || | ||||| || |||| ||| | Sbjct 24758515 CCTTTCTTGGAGACACTGGTGACTTCAGTTTCCATGCTGTT----CCTCCCATTGAGGAC 24758570 Query 162631 TT-CAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATT 162689 || ||| ||||||||| ||||| || | ||||||||| || || ||| ||| Sbjct 24758571 TTTCAGAGCCATCACCATCTCCCTGTTGGTTTTGATGGGAAAGTCTGTCCCACAGGTATT 24758630 Query 162690 AATAACATATTTCCACTTAACG-CTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGG 162748 | || |||||||||| ||| | |||| | |||||| | | ||||||||||| | Sbjct 24758631 CAGAAGGTATTTCCACTGAACTTCAGAGTGCAG-CAGATCTTTCATGCAGTTCAGATCAG 24758689 Query 162749 CCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACAT 162808 |||| || | ||| || || ||||| || || || || || |||| ||||| |||| Sbjct 24758690 CCTGTACTCTGGACCATGAAGCATACACAACACTTTCTAATTTACTGGCTACAAAAACAT 24758749 Query 162809 TGTCGAAACACGAAACTATCCCCATCAC-GGCCAGTGAGAACATCGGGTCCGCTTTCCTA 162867 || || || |||||||| || |||| | || |||| || | | || | ||| Sbjct 24758750 TGGGAAAGCAGGAAACTATTTCCTTCACAGCCCTGTGAAAAGA-CAGGGAAGACTTCTGG 24758808 Query 162868 TCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAAC 162927 || | || | |||||| | ||||| || || || || | | || | || || ||| Sbjct 24758809 TCAATATGGATGCAGTAGATGTTCTGTGGAGCATAAATAGATCGTAGGAGTCGTTCAAAC 24758868 Query 162928 ATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGA 162987 ||||||||||| | ||| | ||| || || || || ||||| || | |||||| | Sbjct 24758869 ATCTCTATCTTCTTGTGGATCACCATGGAGTATGCAATGGGAAAATTTAGCTCCTCCTCA 24758928 Query 162988 CTGAGAGACCCTGTAA 163003 || | || | |||||| Sbjct 24758929 CTTAAAGGCACTGTAA 24758944 >seq22 Length=25248790 Score = 84.2 bits (92), Expect = 3e-11 Identities = 143/206 (69%), Gaps = 10/206 (5%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | || ||| | | || | |||||| || |||||||||| || || | Sbjct 16975426 GCCAGCTCTTTGGGTGACTTAAAATCATCCACGTGGATAAAAGCGTCTCTTGGAACAAAG 16975485 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || ||||| || ||||| | || || || || | || || | |||| ||||| Sbjct 16975486 TTCTCGTAGTTTTCTCTGGTCGTGCCAAGAACCACCGGCACTG----TGCCCACAGAGAG 16975541 Query 177066 CGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATA 177121 || ||||||||||| || || |||||| |||| || ||||||||||| | | ||| Sbjct 16975542 GGGGGCGTAGAGTTTTTCAGTGATGTAGTCCATGTGAACTGAGTTCTCAAAGGACAAATA 16975601 Query 177122 GAATTTACAGGAAG--ATAGTAGCGG 177145 || ||||| || ||||||| || Sbjct 16975602 AAACTTACAACTAGACATAGTAGGGG 16975627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578411986252800