Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq13 228 8e-55 seq12 111 1e-19 seq14 84.2 2e-11 >seq13 Length=33524197 Score = 228 bits (252), Expect = 8e-55 Identities = 991/1537 (64%), Gaps = 48/1537 (3%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| | || ||||| || | |||||| | | | || | ||||| ||| | | | Sbjct 17856127 TTGACAATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCC 17856068 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || | ||||| || ||||| | || ||||| |||| || || |||||| ||||| | Sbjct 17856067 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGC 17856008 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA-AGTTTGCCAGTCCCA 147071 | || || | || || | ||| || ||||||| || || ||||||||| Sbjct 17856007 AGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTT-CCAGTCCCA 17855949 Query 147072 CA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129 || ||| | |||||| | |||||||||||||||||| | || ||| |||| Sbjct 17855948 CAGGTCG--GTCGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTGCTGACGGGC 17855891 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAAT-TCACAGCTTGCCTCGAG 147188 ||| || |||| |||| ||| || ||||| | | || ||||| ||||| || Sbjct 17855890 GAGCCCTCGTACGTCTCGTAGGGGCCGA-GCTCTGCGGCGAGCTCGCAGCTGGCCTCCAG 17855832 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 || | | ||| ||||| ||| ||| || |||| || | ||||| ||| || Sbjct 17855831 GGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTC 17855772 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | | || |||| || | ||||| ||||||| |||||||| |||| ||||| || Sbjct 17855771 GAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGG 17855712 Query 147309 TC---GATGCTTTTCGTTGCTGCGCTTCGCGCTC-GCTATGGGATAGTGGTTGCGATCAA 147364 | || |||| |||| || ||| || | | || |||| |||| || | Sbjct 17855711 CCTGTGACGCTT---GTTGGA-CGTCTCGGCTTCAGGGACCGGGTAGTAGTTGATGTCGA 17855656 Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCAT 147424 | |||||||||||||| ||| | || || || | | || |||| ||| || Sbjct 17855655 TGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGA 17855596 Query 147425 AAGTCCCGTCTT-CGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACG 147483 |||||| ||| || |||||| || ||| | |||||| || ||||| ||||||||| Sbjct 17855595 AAGTCCGCTCTGGCGTGACGTAC--AT--GTTGAGGGCGATGGAGGCCAGGTTGCAGACG 17855540 Query 147484 GCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATG 147543 ||| ||| || | | |||||| ||| | || | ||| || ||||||||||| || Sbjct 17855539 GCCACCTCATCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGATTGCTGCATTTGATC 17855480 Query 147544 ACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 147603 |||| || | ||| ||||| |||| ||||| ||||| ||| |||||||||| || Sbjct 17855479 GTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGC 17855420 Query 147604 CCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGC---TCGCAC 147659 ||||| ||| || | || | ||| | || || | |||||| | ||| Sbjct 17855419 GTCCCGGTTTCGGTCTGGGACTCGATGAT-GGCGTACCAGAGCTGCTGCGCCTTTACCAC 17855361 Query 147660 CCGCTGCCGATAGCGGCCC-TCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGC 147718 | || | | | ||| || || || || | ||| | | ||| ||||| || | Sbjct 17855360 CTTCTTC----ACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTC 17855305 Query 147719 CGTAGCAATCGGCAAGGCCGGGACACT-GATGCGGACACATCAGCGACCACATGTCGTCC 147777 | |||| ||| | || || ||||||| | || |||||||||| ||||| | || Sbjct 17855304 CCCAGCACTCGTCTAGCCCAGGACACTCGCTG-GGACACATCAAGGACCAGTCCTGGTTG 17855246 Query 147778 GCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--GCG 147835 | || | ||| ||||| || || | ||||| ||||| | |||||| | || Sbjct 17855245 CTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGATCTCTGGCT 17855186 Query 147836 CTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGT 147895 || ||| ||||| || |||| |||| | || | | | | |||| || Sbjct 17855185 CTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGT 17855128 Query 147896 GCCAGGGTTCAATGTAGACGGCCAGCGCACC---TTTACGCTTTCCGCCCTGGTCGACAT 147952 |||| || || | ||| | ||| | || || | | || |||||||||||||| | Sbjct 17855127 GCCACGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGT 17855068 Query 147953 GGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGG 148012 ||| || ||||||| | || | || ||| || ||| ||| | | ||||||||| Sbjct 17855067 AGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGG 17855008 Query 148013 TGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGC 148072 || ||| | ||| || | ||| | | ||| ||||| || ||||| Sbjct 17855007 TGCCGGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAG 17854948 Query 148073 CGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGT 148132 || |||| || ||| |||||| | || || |||||||| ||||||||||||| Sbjct 17854947 CGGACTTGGAAATGAGAGCGCACTGCTTCAGGGTGTCATAGATGCCTTCGATGCTGTCGT 17854888 Query 148133 TTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCG--CGTTCCCGCCG-AGA 148189 || | | | |||| || || ||| ||||| ||| | ||||| || || Sbjct 17854887 CCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGG---CCGGTTGGTCCCGGCGTTGA 17854831 Query 148190 AAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAG 148249 | ||||| ||| ||||| || ||| | || | || | | || ||||| || | Sbjct 17854830 AGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGG 17854771 Query 148250 CGTCTTCGATGTCGTCG-CCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGT 148308 || | |||||||| ||| ||||| || || | | || | ||||||||||||||| || Sbjct 17854770 CGGCGTCGATGTC-TCGCCCGTGGATCCCAACTGACACCCTCATGAGCATGTGCTGCGGC 17854712 Query 148309 CGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCA 148368 || ||||| |||| ||||||||| || || || || || || ||| | || Sbjct 17854711 CGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCG 17854652 Query 148369 AAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGG 148405 ||| | ||||| |||||| |||||| ||||| Sbjct 17854651 AAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGG 17854615 >seq12 Length=26439574 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| || |||||| |||||||| || | | Sbjct 2383290 GACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCA 2383231 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||| | |||||||||||||| ||| ||| ||||| Sbjct 2383230 AAGATGAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCCTGAATCTTTGCTTTCACG 2383171 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | |||||||| || | || | || || ||||| || ||||| Sbjct 2383170 TTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTC 2383111 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 2383110 ACGAAAATCTGCAT 2383097 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| || |||||| |||||||| || | | Sbjct 2383518 GACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCA 2383459 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||| | |||||||||||||| ||| ||| |||| Sbjct 2383458 AAGATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCCTGAATCTTTGCCTTCACG 2383399 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | |||||||| || | || | || || ||||| || ||||| Sbjct 2383398 TTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTC 2383339 Query 132110 ATGAAAATCTGCATGACT 132127 | |||||||||||| || Sbjct 2383338 ACAAAAATCTGCATGCCT 2383321 >seq14 Length=28338960 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || |||||| ||||| || |||| | Sbjct 16346965 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 16346906 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || || || ||||| || ||||| || || |||| Sbjct 16346905 AAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACA 16346846 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | |||||||| || | || | ||||| || || || || || Sbjct 16346845 TTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTG 16346786 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 16346785 ACGAAGATCTGCAT 16346772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476594709252480