Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq5 100 9e-18 seq9 98.7 3e-17 seq7 98.7 3e-17 seq10 91.5 5e-15 >seq5 Length=33908744 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 24174686 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 24174745 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 24174746 CCCGGGTTTCGGC 24174758 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 15920926 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 15920867 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 15920866 CCGGGTTTCGGC 15920855 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 16002629 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 16002570 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 16002569 CCGGGTTTCGGC 16002558 >seq9 Length=34117797 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 26103206 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 26103147 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 26103146 CCGGGTTTCGGC 26103135 >seq7 Length=31413364 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 26023734 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 26023793 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 26023794 CCGGGTTTCGGC 26023805 >seq10 Length=32819797 Score = 91.5 bits (100), Expect = 5e-15 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || ||| |||||||| ||||||||| | ||||||||||||| ||||||||||||||| Sbjct 21091775 ATCGCCGAAATAGCTCAGCTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCA 21091834 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 21091835 AACCCGGGTTTCGGC 21091849 Score = 87.8 bits (96), Expect = 6e-14 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || ||| |||||||| ||||||||| | ||||||||||||| ||||||||||||||| Sbjct 21091469 ATCGCCGAAATAGCTCAGCTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCA 21091528 Query 2826 ACCCCGGGCTT 2836 | |||||| || Sbjct 21091529 ATCCCGGGTTT 21091539 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||| ||||||||| | ||||||||||||| |||||||||||||||| ||||| Sbjct 21092087 AAATAGCTCAGCTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAAACCCGG 21092146 Query 2833 GCTTCAGC 2840 | ||| || Sbjct 21092147 GTTTCGGC 21092154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849120153360