Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq13 159 3e-34 seq14 113 5e-20 seq12 113 5e-20 >seq13 Length=33524197 Score = 159 bits (176), Expect = 3e-34 Identities = 905/1430 (63%), Gaps = 32/1430 (2%) Strand=Plus/Plus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| || |||| |||||||| || || || || || |||||||| || | || Sbjct 17854676 CTACCTGCTGAAGATCAACGGGAAAGTGGCCGAGCGGCCGCAGCACATGCTCATGAGGGT 17854735 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 | | || || || ||||| |||||| ||||||||| | || || ||| | | |||| Sbjct 17854736 GTCAGTTGGGATCCACGGGCGAGACATCGACGCCGCCATCGAGACCTACAACCTCCTGTC 17854795 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCA 7703 ||| ||| || ||||| || || ||| | || ||| || || ||| ||| || Sbjct 17854796 GGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCA 17854855 Query 7704 ATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC 7763 ||||| || || |||| ||||| || ||||||||||| ||||| || |||| Sbjct 17854856 GCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATCTATGACAC 17854915 Query 7764 GCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGA 7823 ||| | ||||| |||||||| | || ||||| || || || || | | Sbjct 17854916 CCTGAAGCAGTGCGCTCTCATTTCCAAGTCCGCTGGCGGGATCGGCGTGGCGGTGAGCTG 17854975 Query 7824 CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883 | | || | | || ||| ||||| ||||||||| || ||| ||| || | || Sbjct 17854976 CATCCGATCGACGGGAAGCTACATCGCCGGCACCAACGGCAACTCCAACGGATTGGTCCC 17855035 Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAA 7940 ||| || | || | ||| ||| ||| || | || |||||||| || ||| | Sbjct 17855036 GATGCTGAGAGTTTACAACAACACGGCTCGCTACGTCGACCAGGGCGGCAACAAGAGACC 17855095 Query 7941 AGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCT 8000 || ||| ||||| || |||||||||||||| ||| | | || | || | || Sbjct 17855096 CGGGGCCTTCGCCATGTACCTGGAGCCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCT 17855155 Query 8001 GCGTCGCAACATGGGTTGCGAAGA-CAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGG 8059 | |||| || || || ||| | ||| | ||||| |||| || |||||| Sbjct 17855156 GAAGAAGAACACAGGAAAGGAGGAGCAG-AGAGCCAGAGATCTTTTCTACGCCTTGTGGA 17855214 Query 8060 TGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCG 8119 | || || ||||| |||| | | || | | || | ||||| | ||||| ||| Sbjct 17855215 TCCCTGACCTGTTCATGAAGAGAGTGGAGAGCAACCAGGACTGGTCCTTGATGTGTCCC- 17855273 Query 8120 ATCG-TTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAA 8178 | || || ||| || | | | || | || || | | |||| | Sbjct 17855274 AGCGAGTGTCCTGGGCTAGACGAGTGCTGGGGAGAGGAGTTCGAGAAGCTCTACACCAGA 17855333 Query 8179 TACGAACACGACGGCGCGTACGTGCGGCAAGTG--AAAGCGCGCGACCTGCACCG---CG 8233 || || | || || | ||| | | ||| |||| |||| | | || | | || Sbjct 17855334 TATGAGAAGGAAGG---GAGGGTGAAGAAGGTGGTAAAG-GCGC-AGCAGCTCTGGTACG 17855388 Query 8234 CCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCA 8293 |||| ||||| | || | ||||||||| | ||| |||||||| ||||| |||||||||| Sbjct 17855389 CCATCATCGAGTCCCAGACCGAAACCGGGACGCCCTACATGCTCTACAAGGACGCTTGCA 17855448 Query 8294 ACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAA 8353 || || ||||| || | ||| ||||||| || ||||||||||| ||| | || Sbjct 17855449 ACAGGAAGAGCAACCAGAAGAACCTGGGCACGATCAAATGCAGCAATCTCTGCACGGAGG 17855508 Query 8354 TTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAA 8413 | || |||||| | || || |||||||| ||||| || || || | | | Sbjct 17855509 TGGTGGAGTACACCAGCAAGGATGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCA 17855568 Query 8414 ACGCGTTCGTTGATCGACGCTCAAAC--ACTTACGACTTTGAACAATTGAAAAACGCCGT 8471 || || ||| |||| | | |||| |||| || || || | | |||| Sbjct 17855569 ACATGTACGT-----CACGCCAGAGCGGACTTTCGAC-TTCAAGAA--GCTGGCCTCCGT 17855620 Query 8472 --GCAA-GTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGA 8528 ||| || | || || | | ||||| || |||| | || || | Sbjct 17855621 CACCAAGGTAATCGTGAAAAACCTCAACAAGATCATCGACATCAACTACTACCCGGTCCC 17855680 Query 8529 AGAAGCGCGCG-TATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGG 8587 ||||| || | || |||| ||| ||||| || | || | ||||| || ||||||| Sbjct 17855681 TGAAGC-CGAGACGTCCAACAAGCGTCACAGGCCGATCGGGATCGGCGTCCAGGGTCTGG 17855739 Query 8588 CCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACA 8647 ||||||| || | || |||| | ||| | |||||||| ||||| | ||||||||| Sbjct 17855740 CCGACGCCTTCATCCTGATGCGGCACCCGTTCGAAAGCCCCGAAGCCCAGCTGCTCAACA 17855799 Query 8648 TAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAG 8707 | | || || || | || ||| ||| | || |||||||| | || ||| || Sbjct 17855800 TCCAGATCTTCGAGACCATCTACCACGCCGCCCTGGAGGCCAGCTGCGAGCTCGCCGCAG 17855859 Query 8708 AATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACG 8767 | | ||| | ||||| |||||| |||| || | |||| || || | || |||| Sbjct 17855860 AGCTCGGCCCCTACGAGACGTACGAGGGCTCGCCCGTCAGCAAGGGCATTCTCCAGTACG 17855919 Query 8768 ACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTG 8827 |||||||| | ||||| ||| ||||| | |||| |||| || || | Sbjct 17855920 ACATGTGGGAGAAGACGCCGACCGACCTGTGGGACTGGAAGCTGCTGAAGGAGAAGATCG 17855979 Query 8828 CTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTC 8887 | || || || | || ||| || |||| ||||||||| || | || || | Sbjct 17855980 CCAAACATGGCGTGAGGAACAGCCTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCC 17856039 Query 8888 AAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 | || |||| |||||||| ||| | ||| ||| ||||| |||| | ||| Sbjct 17856040 AGATCCTGGGCAACAACGAGTCCATCGAGGCGTACACCAGCAACATCTAC 17856089 >seq14 Length=28338960 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || |||||||| || || || |||||||| Sbjct 16342771 CCACCCCTGAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGAG 16342712 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||||||||| ||||| |||| | |||||| || || || Sbjct 16342711 AGGGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 16342652 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || ||||| |||||| || | ||||| | ||||| Sbjct 16342651 ATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 16342592 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| ||||| | ||||| ||||| || ||||| Sbjct 16342591 TCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 16342545 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || ||||| ||||| || |||||||||||| Sbjct 16346770 CCACCCCTGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 16346711 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| || || ||||| ||||| | |||||| || || || Sbjct 16346710 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 16346651 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || ||||| ||||| || | ||||| | ||||| Sbjct 16346650 ATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 16346591 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || || ||||| || ||||| Sbjct 16346590 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 16346544 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || ||||| || ||||| ||||| || |||||||||||| Sbjct 16346998 CCACCCCTAAGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 16346939 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 16346938 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 16346879 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || || | |||||| | ||||| Sbjct 16346878 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 16346819 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| ||||| | || || ||||| || ||||| Sbjct 16346818 TCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 16346772 >seq12 Length=26439574 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| ||||| || | ||| ||||| | ||||| ||||| || ||||||||||| Sbjct 2383323 CCTCCCCTGAGACGGAGCACCAGGTGGACGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 2383264 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||||||||| ||||| || | | |||||| || || | Sbjct 2383263 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGCTGGTCAGGAAGA 2383204 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || ||||| ||| ||| || || | || || | ||||| Sbjct 2383203 ATGCCTTCTTTATCCTGAATCTTTGCTTTCACGTTCTCAATGGTATCACTGGGCTCCACC 2383144 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || || | ||||| |||||||| ||||| || Sbjct 2383143 TCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 2383094 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 ||||| ||||| || ||||||||||| | |||| | || || ||||||||||| Sbjct 2383521 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 2383462 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 ||||| |||| | |||||| || || | ||||||||||| || ||||| ||| || Sbjct 2383461 GCAAAGATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCCTGAATCTTTGCCTTC 2383402 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | || || | ||||| || || || ||||| || || || | ||| Sbjct 2383401 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTT 2383342 Query 134697 TTAACGAAAATTTGCAT 134713 || || ||||| ||||| Sbjct 2383341 TTCACAAAAATCTGCAT 2383325 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| ||||| || | ||| ||||| || ||||| ||||| || ||||||||||| Sbjct 2383648 TCCTCCCCTGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 2383589 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | |||| | || || ||||||||||| ||||| |||| | |||||| || || | Sbjct 2383588 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAAG 2383529 Query 134606 TATGC 134610 |||| Sbjct 2383528 AATGC 2383524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505380913215360