Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq13 378 1e-99 seq14 96.9 5e-15 >seq13 Length=33524197 Score = 378 bits (418), Expect = 1e-99 Identities = 1263/1951 (65%), Gaps = 21/1951 (1%) Strand=Plus/Minus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || ||||||| | |||||| | | | ||||| || || || Sbjct 17856184 TTCTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTG 17856125 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || || || || || || | ||| || || ||||| || || ||||| || | || Sbjct 17856124 ACAATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 17856065 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || |||| || Sbjct 17856064 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGC 17856005 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | |||||| | ||| || || || || | ||||| ||||| || Sbjct 17856004 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 17855945 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | || | ||| | ||||| || ||||| || || || | || || Sbjct 17855944 TCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTGCTGACGGGCGAGCCC 17855885 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | || || || || || || || | | || || || || || ||||| | || || Sbjct 17855884 TCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCG 17855825 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 | || || || ||||| |||| | ||||| || ||||| | || ||||| || Sbjct 17855824 TGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGAACGGG 17855765 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 | | | || || || || || |||| ||||| || || || ||||| || || || Sbjct 17855764 TGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGA 17855705 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | ||| || || | || ||||| || | || || || || || || || || || || Sbjct 17855704 CGCTTGTTGGACGTCTCGGCTTCAGGGACCGGGTAGTAGTTGATGTCGATGATCTTGTTG 17855645 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCA-TC 69251 || ||| || | ||| || ||| || || || || || |||| || Sbjct 17855644 AGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAA-GTCCGCTC 17855586 Query 69252 TA---TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGA 69308 | | || |||| || || || | || || || || || || || ||||||| Sbjct 17855585 TGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCATCCTT 17855526 Query 69309 ATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTG 69368 | | || | | | ||| || || ||||| || |||||||| || ||||| || | Sbjct 17855525 GCTGGTGTACTCCACCACCTCCGTGCAGAGATTGCTGCATTTGATCGTGCCCAGGTTCTT 17855466 Query 69369 CTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAAT 69428 ||| || ||||| |||| || ||||||||||| || || | || || || ||||| | Sbjct 17855465 CTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGT 17855406 Query 69429 CTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT 69488 ||| || ||||| || | | ||| | | || |||| || |||| || || Sbjct 17855405 CTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTTACCACCTTCTTC--ACCCTC 17855348 Query 69489 C--TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546 | || || |||||| || || ||| ||||| || |||||||| || || | Sbjct 17855347 CCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCTAGC 17855288 Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 |||||||| || | ||||||||||| ||||| | | | || |||| ||||| Sbjct 17855287 CCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATG 17855228 Query 69607 AATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC 69665 || || || || ||||| | || || ||| |||||||||| ||| | || || ||||| Sbjct 17855227 AACAGGTCAGGGATCCACAAGGCGTAGAAA-AGATCTCTGGCTCTCTGCTCCTCCTTTCC 17855169 Query 69666 TGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 69725 ||| || || || || || || || || | | || | ||||| || || || || || Sbjct 17855168 TGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACAT 17855109 Query 69726 CGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATA 69785 || | | | || |||| || || || ||||| || | ||| | || ||||| || || Sbjct 17855108 GGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTA 17855049 Query 69786 GACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCC 69845 |||||||||||||| | | || || || || || || || || | || || ||||| Sbjct 17855048 AACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTTCC 17854989 Query 69846 TCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGC 69905 | | || || || | | | || || || || || || || || ||||| Sbjct 17854988 CGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGAGC 17854929 Query 69906 ACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAA 69965 || | |||| |||||||| || || || ||||| || || ||||| || || || Sbjct 17854928 GCACTGCTTCAGGGTGTCATAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAA 17854869 Query 69966 ACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGT 70025 ||||| |||| || | | | || || || || || | || ||||| ||||| || Sbjct 17854868 GCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGT 17854809 Query 70026 GAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATG 70085 |||||| || || || || || ||||| || || || || | || || || | | || Sbjct 17854808 GAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCGGCGTCGATGTCTCGCCCGTG 17854749 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 || || | | || | ||| | ||| ||||| || || || || ||| || || Sbjct 17854748 GATCCCAACTGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGAT 17854689 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 |||| |||||| || |||||||| || || || || ||||||| || || ||||| Sbjct 17854688 CTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCT 17854629 Query 70206 TTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCA-TAACAG 70264 |||||||| || ||||| || ||||| | || | || || || | | | Sbjct 17854628 GTCGTAAATGATGGAGGAATTGAGGCGGTCCTTGTTTTCCATGACGATGTCGAGTGTCTC 17854569 Query 70265 TAGGTGAGATAATCGGAGA---TCGTTTACCATTTTTAGGATTAACATAGTTGAATAAAT 70321 | ||||| || ||||| ||||| || ||| || || ||| ||| | | Sbjct 17854568 CTTG-GAGATCATGGGAGAGTGGCGTTT---GTTCAGAGGGTTGACGTAGGCGAACAGGT 17854513 Query 70322 CTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTC 70381 ||||||| || || || || | || || || |||||||| | || || | ||| || | Sbjct 17854512 CTTCCATCACCTCGCTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATCC 17854453 Query 70382 TGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAG 70441 | || || || || || ||||| || |||| || || || || || || || || | Sbjct 17854452 TCGCAGCCAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGGGTGGCCGCAATCTCTGCCG 17854393 Query 70442 CTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| |||| || | || || || ||| | || | || || || || ||||||| Sbjct 17854392 CTAGCGTGTCTAGCTCCACGGTGGTGACGCCGCTGTACAAGCCCTGGATCACCTTCATGG 17854333 Query 70502 CTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCT-AATACGA 70560 || | | ||||| | || || | |||||| || || || || |||| || || Sbjct 17854332 TGATCTGAGTCGGATCCACAAAGTCCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGG 17854274 Query 70561 GATGTAATTTTATCAAACATAACATTCTCCT 70591 || || |||||||| ||||| || ||||| Sbjct 17854273 GAGGTGATTTTATCGAACATGACGCGCTCCT 17854243 >seq14 Length=28338960 Score = 96.9 bits (106), Expect = 5e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || || || || | |||||||| |||||||||||||| || || |||||||| ||| Sbjct 9812843 GTGCCGGCGTTGAACAGGGTAGGAGAGGCGTGAGTGAACCACTTCTCTGAAAGCAGGTTG 9812902 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 |||||||||| ||||| || || || | | ||||| || | || || | ||||| | Sbjct 9812903 TATGTTTCAACAGCTGCATCAATGTCTCCTTTGTGAATCCCGACTGCCACCCTCATCAGC 9812962 Query 70111 ATATGCTGAGGTC 70123 || ||||| |||| Sbjct 9812963 ATGTGCTGGGGTC 9812975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686885032955520