Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq13 178 2e-39 seq21 89.7 6e-13 >seq13 Length=33524197 Score = 178 bits (196), Expect = 2e-39 Identities = 959/1503 (64%), Gaps = 66/1503 (4%) Strand=Plus/Minus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || || | | ||||| |||| |||||| |||||| Sbjct 17856182 CTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGAC 17856123 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 ||| ||||| || | || || | ||||||||| | ||||| | || | Sbjct 17856122 AATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGAT 17856063 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || |||||||| || || ||||| || |||| || || Sbjct 17856062 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAG 17856003 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 110852 ||||| | | || | | ||| ||||| || | | |||||| | | Sbjct 17856002 GCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 17855943 Query 110853 GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCCTTGG-GACGCGGGAGAACC 110910 | | || || || |||||||||| |||| || | |||||| |||| | ||| || Sbjct 17855942 GGTCGGCGTCTTCT-CCCACATGTCGTACTGGAGAATGCCCTTGCTGACGGGCGAG--CC 17855886 Query 110911 CTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 110970 ||| | || || |||| || | || | || | || ||||| |||||||||| || Sbjct 17855885 CTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGC 17855826 Query 110971 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 111030 ||| || ||||| || ||||| | || | | || |||||| || || | Sbjct 17855825 GTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGAACGG 17855766 Query 111031 GTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 || || ||| || || || | || || ||||| || || || | || || || |||| Sbjct 17855765 GT-GCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGT 17855707 Query 111090 GTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTC 111146 | ||| | || ||| | | | | ||| || || || | || |||| |||| Sbjct 17855706 GACGCTTGTTGGACGT---CTCGGCTTCAGGGACCGGGTAGTAGTTGATGTCGATGATCT 17855650 Query 111147 GGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGC 111206 ||| || ||||| | | ||| |||| || || | | || ||||| | Sbjct 17855649 TGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCC 17855590 Query 111207 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 111266 | |||| |||| ||| | |||||||| || |||| ||||| || ||| || Sbjct 17855589 G---CTCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCT 17855533 Query 111267 CATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCA 111326 ||||||| |||||||| | | || || || | ||| | || ||||| |||| Sbjct 17855532 CATCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGATTGCTGCATTTGATCGTGCCCA 17855473 Query 111327 AATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 111386 ||||| ||||| |||||| ||||||| || |||||||||||||||||||||||||| | Sbjct 17855472 GGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGG 17855413 Query 111387 TCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTG 111445 | || ||||| || | || || || | ||| | | | ||| || ||| | || Sbjct 17855412 TTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCT-TTACCACCTTCTTC 17855354 Query 111446 GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTC 111504 ||| || ||| ||| || | |||||||| || |||||||| ||| | || || Sbjct 17855353 ACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCC-CAGCACTC 17855295 Query 111505 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCAACC 111562 | || || || || | ||||| | | ||||| | || || ||| || Sbjct 17855294 GTCTAGCCCAGGACACTCGCTGGGACACATCAAGGACCA--GTCCTGGTTGCTCTCCACT 17855237 Query 111563 CGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCT 111622 | ||||||||| ||||| || ||||||| || | || |||||||| | ||| Sbjct 17855236 CTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGATCTCTGGCTCTCTGCTCC 17855177 Query 111623 TCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTC 111681 || | ||| ||| || | | ||| ||||| || | | || |||||| ||||| Sbjct 17855176 TCCTTTCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGCTC 17855118 Query 111682 AAGATAGACTGCGA------TAGATCCCTT-TCGACGCCCAGCTTGATTTACATAGCGCG 111734 || || | |||| | || ||| | | ||||| || | || ||||| | Sbjct 17855117 CAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCC----TGGTCGACGTAGCGAG 17855062 Query 111735 CTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCC 111794 | ||| ||| | || | ||||| || | | || | || | || || || || Sbjct 17855061 CCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCC-- 17855004 Query 111795 GAATACGAGATTTATTGGCTCTCACATC-AT-GGATG---------TGCATCCCAATACC 111843 | ||| || ||| || | || || ||||| || || || || Sbjct 17855003 -----GGCGATGTA---GCT-TCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCC 17854953 Query 111844 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 111903 ||||| |||| || || | || |||| | | || || ||||||| || | ||| Sbjct 17854952 GCCAGCGGACTTGGAAATGAGAGCGCACTGCTTCAGGGTGTCATAGATGCCTTCGATGCT 17854893 Query 111904 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCA 111961 ||| ||||| |||||| |||||||| ||||||| |||||| | ||| || || || Sbjct 17854892 GTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTG--GTCCCGGCG 17854835 Query 111962 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTC 112020 ||||||||||| || | ||||| ||||| || | | |||| || ||| ||||| Sbjct 17854834 TTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGAGGTTGTAGGTCTC 17854776 Query 112021 CAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTG 112080 | | | | || |||||| ||||||||| || | || |||| ||||| ||||| ||| Sbjct 17854775 GATGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACTGACACCCTCATGAGCATGTGCTG 17854716 Query 112081 TGG 112083 || Sbjct 17854715 CGG 17854713 >seq21 Length=25773841 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||||||||||||||||||||||||||||||||| || || |||||| ||||| Sbjct 1861790 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 1861731 Query 122431 AAGTCAAATGGATTCTTCG 122449 ||||| || || |||| || Sbjct 1861730 AAGTCGAACGGGTTCTCCG 1861712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628010270092800