Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq13 150 2e-31 seq11 100 4e-16 >seq13 Length=33524197 Score = 150 bits (166), Expect = 2e-31 Identities = 883/1390 (64%), Gaps = 42/1390 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| ||||| Sbjct 17856088 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 17856029 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || ||||||||||| |||| || |||||||| | | || | || || ||| Sbjct 17856028 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 17855969 Query 118302 TTGAG-AGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTG 118357 || || ||| ||| |||| | || | | |||| | || ||||| || |||| Sbjct 17855968 TTCAGCAGCTTCC-AGTCCCACAGGTCGGTCGGCGTCTTCTCC---CACATGTCGTACTG 17855913 Query 118358 GAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 118415 ||| || || | | |||| ||||| ||||| | ||||| || ||||| | | Sbjct 17855912 GAGAATGCCCTTGCTGACG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCG 17855855 Query 118416 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTC 118475 || | ||| |||| ||||| ||||| ||||| || || || || || || | || Sbjct 17855854 GCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTG 17855795 Query 118476 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGA 118535 | || ||| ||| | || |||| | | || || || || | || || ||| Sbjct 17855794 AGCAGCTGGGCTTCGGGGCTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGA 17855735 Query 118536 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC--- 118592 || ||||| |||| || || || | || | | | || ||| || ||| || Sbjct 17855734 CCCTGGACGCCGATCCCGATCGGCCTGTGACGCTTGTTGGACGTCT---CGGCTTCAGGG 17855678 Query 118593 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 118652 || || || | || | ||||| | | | || || ||||| || ||||| |||| Sbjct 17855677 ACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACG 17855618 Query 118653 TCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 118712 ||||| | | | || ||| | || |||| |||| ||| | |||||| Sbjct 17855617 GAGGCCAGCTTCTTGAAGTCGAAAGTCCG---CTCTGGCGTGACGTACATGTTGAGGGCG 17855561 Query 118713 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTG 118772 || || ||||| || || || | ||||||||| |||||||| | | |||||| Sbjct 17855560 ATGGAGGCCAGGTTGCAGACGGCCACCTCATCCTTGCTGGTGTACTCCACCACCTCCGTG 17855501 Query 118773 CACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832 || | || | || || ||||||| |||||| || || ||| |||| || || Sbjct 17855500 CAGAGATTGCTGCATTTGATCGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCG 17855441 Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 118892 |||||||| |||||||| |||||||| || || || ||||||| || || || | |||| Sbjct 17855440 TCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAG 17855381 Query 118893 ACAT-CGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAG 118951 | | | || || || | || | | ||| || | ||| || | |||||||| Sbjct 17855380 AGCTGCTGCGCCTTTACCACCTTC-TTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAG 17855322 Query 118952 GGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGA 119010 || ||||| || ||| | ||| ||||| || || ||||| || | | Sbjct 17855321 CTTCTCGAACTCCTCTCCCCAGCACTCGTCTAGCCCAGGACACTCG-CTGGGACACATCA 17855263 Query 119011 GAGACCATTGACCACCCTCCTCA--ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 ||||| | || | ||| || | ||||||||| ||||| |||||||| | || Sbjct 17855262 AGGACCAGT--CCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGC 17855205 Query 119069 CGAGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 119127 |||| ||||| | | | ||| || | | || || || || ||||| | Sbjct 17855204 GTAGAAAAGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGA 17855146 Query 119128 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGA 119183 |||| | | || ||||||||| |||||||||| |||| | ||| || | Sbjct 17855145 AGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGT 17855086 Query 119184 CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATA 119243 | || |||||| || || | || ||| ||| | || | ||||| || | | Sbjct 17855085 TG-CCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAAT 17855027 Query 119244 CCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGC--TCTGACATCGTGGA 119301 || | ||| | ||| || || || || || ||| | | || || | | Sbjct 17855026 CCGTTGGAGTTGCCGTTGGTGCCGGCGATGT-AG-CTTCCCGTCGATCGGATGCAGCTCA 17854969 Query 119302 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGT 119361 || || || || || || |||| || || | ||||||| | | || || | | Sbjct 17854968 CCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGAGCGCACTGCTTCAGGGTGTCAT 17854909 Query 119362 AGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCC 119421 |||| || ||||| ||| |||| | |||| ||||||||||| |||| || |||| Sbjct 17854908 AGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCC 17854849 Query 119422 TGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATC 119480 | || || ||||||||||| || || | |||||| ||||| || | | |||| Sbjct 17854848 GGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGG 17854790 Query 119481 TTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGC 119540 || ||||||||| | | ||||| |||||| |||||| || || | || |||| | Sbjct 17854789 AGGTTGTAGGTCTCGATGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACTGACACCCTC 17854730 Query 119541 ATAAACATGT 119550 || | ||||| Sbjct 17854729 ATGAGCATGT 17854720 >seq11 Length=28875558 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||||| || ||| || || ||||||||||| || | ||||| Sbjct 15203443 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 15203384 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||| | || ||| ||||||||| |||||||| ||||||||||| ||||| | Sbjct 15203383 TCAGCCAGTAGATAGCAGCAAATGAGCCCGAGAAGAAAATCCCCTCCACTGCTGCGAAAG 15203324 Query 130155 CAAAGAGACGCTC 130167 | | |||||||| Sbjct 15203323 CCACAAGACGCTC 15203311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618413802142080