Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq13 122 1e-22 seq21 84.2 3e-11 >seq13 Length=33524197 Score = 122 bits (134), Expect = 1e-22 Identities = 950/1510 (63%), Gaps = 80/1510 (5%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||| | ||| | | || || || ||| |||||| || | | | Sbjct 17854713 CCGCAGCACATGCTCATGAGGGTGTCAGTTGGGATCCACGGGCGAGACATCGACGCCGCC 17854772 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || |||| | | || ||||| ||||| | || |||||||| Sbjct 17854773 ATCGAGACCTACAACCTCCTGTCGGAGAAGTG-GTTCACCCACGCCTCTCCGACCCTCTT 17854831 Query 104341 CAATGCTGGTAC--ACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||| || || || ||| | || || ||||||| |||||||| |||||| ||||| Sbjct 17854832 CAACGCCGGGACCAACC--GGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGAC 17854889 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| ||| | || ||||||| || || | | |||| || | || || |||| ||| Sbjct 17854890 GACAGCATCGAAGGCATCTATGACACCCTGAAGCAGTGCGCTCTCATTTCCAAGTCCGCT 17854949 Query 104459 GGGGGTATTGG---------GATGCACATCC-AT-GATGTGAGAGCCAATAAATCTCGTA 104507 || || || || || ||||| || || | || ||| || ||| | Sbjct 17854950 GGCGGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACGGGA-AGC---TACATCGC--- 17855002 Query 104508 TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 104567 || || || || | || | || | | || ||||| | || | ||| || Sbjct 17855003 ----CGGCACCAACGGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAACA 17855058 Query 104568 CAGCGCGCTATGTAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTAT 104620 | || ||||| | || | | ||||| | | ||| || | |||| | || Sbjct 17855059 CGGCTCGCTACG----TCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTAC 17855114 Query 104621 CTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGAC 104680 || ||||| |||||| || | | || ||||| ||| || ||| ||| | Sbjct 17855115 CTGGAGCCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAG 17855174 Query 104681 GAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAG 104740 |||||| | | | | ||||| |||| ||| | ||||| || || || ||||||||| Sbjct 17855175 GAGGAGCAGAGAGCCAGAGATCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGAAG 17855234 Query 104741 AGAGTTGAGGAGAGTGGC---AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTC 104797 ||||| |||||| | | ||||| | | ||||| | || ||||| || Sbjct 17855235 AGAGT---GGAGAGCAACCAGGACTGGTCCTTGATGTGTCCCAGCGAGTGTCCTGGGCTA 17855291 Query 104798 TCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG 104856 ||| ||| | ||| |||||||| || || ||||| | || ||| | ||||| | Sbjct 17855292 GACGAGTGCTG-GGGAGAGGAGTTCGAGAAGCTCTACACCAGATATGAGAAGGAAGGGAG 17855350 Query 104857 GGCGACTGCGACGGTG--CCAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAAC 104913 || || || |||| || || | | | ||| | || || || |||| || || Sbjct 17855351 GGTGA---AGAAGGTGGTAAAGGCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGAC 17855407 Query 104914 CGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAA 104973 ||| || || || || |||||||| ||||| ||||| || ||| ||||| || || || Sbjct 17855408 CGAAACCGGGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGAA 17855467 Query 104974 GAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAA 105033 ||| |||| |||||| | ||||||||| || || | |||| | || ||| Sbjct 17855468 GAACCTGGGCACGATCAAATGCAGCAATCTCTGCACGGAGGTGGTGGAGTACACCAGCAA 17855527 Query 105034 AGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA 105093 |||||| ||| || || ||||| || || ||||| ||| || ||| || ||||| Sbjct 17855528 GGATGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGA 17855587 Query 105094 GACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCT 105153 | ||| || || | | || || | || || || || |||||||| Sbjct 17855588 G---CGGACTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCT 17855644 Query 105154 AAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATAT 105210 |||| | || || | || | ||||| || ||| || | || || | Sbjct 17855645 CAACAAGATCATCGACATCAACTACTACCCGGTCCCTGA---AGCCGAGACGTCCAACAA 17855701 Query 105211 GAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCG 105270 | | ||| | || || || |||| || |||||||| || || | ||||| || || Sbjct 17855702 GCGTCACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATGCG 17855761 Query 105271 CCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTA 105330 ||| | || || | |||||| || |||| | || || |||||||| || Sbjct 17855762 GCACCCGTTCGAAAGCCCCGAAGCCCAGCTGCTCAACATCCAGATCTTCGAGACCATCTA 17855821 Query 105331 TCACGCCGCTCTTGAGGCGAGTTCAGAGTT---GGCAGAGGTTGATGGTCCATATGAAAC 105387 |||||||| || ||||| || | ||| | |||||| | || || || || || Sbjct 17855822 CCACGCCGCCCTGGAGGCCAGCTGCGAGCTCGCCGCAGAGCT---CGGCCCCTACGAGAC 17855878 Query 105388 CTTTGAGGGTTCTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGG--GAAGGTG 105443 | ||||| || || | ||| |||||| | || || | || |||||| |||| | Sbjct 17855879 GTACGAGGGCTCGCC--CGTCAGCAAGGGCATTCTCCAGTACGACATGTGGGAGAAGACG 17855936 Query 105444 -AGACCAAGCTTCACTACGACTGGGAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCT 105501 |||| | || | |||| ||||||| || ||||| ||| | | || | Sbjct 17855937 CCGACCGACCT---GTGGGACT-GGAAGCTGCTGAAGGAGAAGATCGCCAAACATGGCGT 17855992 Query 105502 TCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAA 105561 | ||||| || || |||| || ||||| || || |||||||| || ||| |||| || Sbjct 17855993 GAGGAACAGCCTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAA 17856052 Query 105562 TAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGA 105621 || || | | | || | ||||| | |||||||| | || || | ||||| Sbjct 17856053 CAACGAGTCCATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGA 17856112 Query 105622 GTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAA 105681 ||| |||||||||| || ||| | | ||||| | ||| || || ||| | | Sbjct 17856113 GTTCCAGATTGTCAACCCTCACCTCCTCAAGGACCTGACGGAGCGCGGCCTGTGGAACGA 17856172 Query 105682 GGATATGAAG 105691 ||| |||||| Sbjct 17856173 GGAGATGAAG 17856182 >seq21 Length=25773841 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||||||||||| ||| ||| || | ||||| |||||| |||| Sbjct 1860807 GTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGGC 1860866 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 || ||||| || || |||| ||||||||| ||| || ||||||| Sbjct 1860867 CTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCCGAGACGAGG 1860915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583240619176320