Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq13 439 3e-118 seq21 100 3e-16 seq11 95.1 1e-14 >seq13 Length=33524197 Score = 439 bits (486), Expect = 3e-118 Identities = 981/1451 (68%), Gaps = 35/1451 (2%) Strand=Plus/Minus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 |||||| |||| ||| || ||| |||||||||| | ||||||| ||||| | ||| Sbjct 17856116 GAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTC 17856057 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 |||||| |||| |||||||||||| || || || |||||||| || | ||| || || Sbjct 17856056 GTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTT 17855997 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAG------GCCGTCCCAAAATTCATTCGC 78680 || | ||||| | ||||| |||| || | |||||| | || ||| Sbjct 17855996 CCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGG 17855937 Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCT--CGGACGCCGGCGACCCCTTGAAC 78738 || || |||||||||| || || || |||| | |||| ||||| |||| | || Sbjct 17855936 CGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTGCTGACG--GGCGAGCCCTCGTAC 17855879 Query 78739 GTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCA---TGACTCGAGCAGGGCCGCGTGG 78795 |||||||| | || ||| |||||| ||||| | ||| |||||| |||||| Sbjct 17855878 GTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTC---CAGGGCGGCGTGG 17855822 Query 78796 TACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTT--GGTCTCGTCGAACGAAA 78853 || | | ||||||||| |||||||| || | ||| || || ||||||| Sbjct 17855821 TAGATGGTCTCGAAGATCTGGATGTTGAGC-AGCTGGGCTTCGGGGCT-TTCGAACGGGT 17855764 Query 78854 GGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGC 78913 | | | || |||||| | |||||||| |||||||||||||| ||||||| | ||| | Sbjct 17855763 GCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGAC 17855704 Query 78914 GCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCA 78973 || ||||| | | ||| | | |||||| |||| ||||||| ||| | Sbjct 17855703 GCTTGTTGGACGTCTCGGCTTCAGGGACCGGGTAGTAGTTGATGTCGATGATCTTGTTGA 17855644 Query 78974 GGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAA---TGATTTC 79030 |||| | || ||| || || | || || ||| || ||| | | | Sbjct 17855643 GGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTG 17855584 Query 79031 CTTTGATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGC 79090 ||| | | | ||| | || ||||||||||| |||||| ||| ||| || Sbjct 17855583 GCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCATCCTTGC 17855524 Query 79091 TAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCT 79150 | | ||| | | || ||||| | ||| | ||||| ||||| | |||||||| Sbjct 17855523 TGGTGTACTCCACCACCTCCGTGCAGAGATTGCTGCATTTGATCGTGCCCAGGTTCTTCT 17855464 Query 79151 GGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCT 79210 ||||||||||| ||| || |||||||||||| |||||| ||||||||||| || || Sbjct 17855463 GGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCT 17855404 Query 79211 GACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCT 79270 | || || | | ||| ||||| | | | ||| || |||||||| ||| |||| Sbjct 17855403 GGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTTACCACCTTCTT-CACCCTCCCT 17855345 Query 79271 GTGCGACGTACGTCCG--GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCC 79328 | | | | || | ||| | || | ||| |||| || || ||| || || Sbjct 17855344 -TCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCTAGCCC 17855286 Query 79329 CGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAA 79388 || |||||| || ||||||| | |||||||| || |||| || ||| |||||| Sbjct 17855285 AGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAA 17855226 Query 79389 GAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTG 79448 ||||| |||||||||| ||| ||| || || | | | | |||||| | || Sbjct 17855225 CAGGTCAGGGATCCACAAGGCGTAGAAAAGATCTCTGGCTCTCTGCTCCTCCTTTCCTGT 17855166 Query 79449 GTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGC 79508 |||| |||||| || ||||| | | |||| ||||||||||||||| || ||||| Sbjct 17855165 GTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGC 17855106 Query 79509 GAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAAC 79568 ||| | || | |||| ||||||||||| |||||| || |||||||||||| |||| Sbjct 17855105 GAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAAC 17855046 Query 79569 TCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGAT-TCGTGTACCGC 79627 || ||||| || || | |||| || | |||||| || ||| ||| | | | ||| Sbjct 17855045 TCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTTCCCG- 17854987 Query 79628 TCGCCCGAATGTTCGAGCAGTG-GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCG 79686 ||| || ||| | || | | ||||| || || | ||||||| ||| | ||| Sbjct 17854986 TCGATCGGATG-CAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGAGCG 17854928 Query 79687 CACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAG 79746 |||| ||| || || || |||||||| ||||| |||||||||||| |||| ||||||| Sbjct 17854927 CACTGCTTCAGGGTGTCATAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAG 17854868 Query 79747 CAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTG 79806 ||||| |||| ||| || ||| || |||||||||||||||||||| | ||||| ||| Sbjct 17854867 CAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTG 17854808 Query 79807 AAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCG-GGAGGTCGTCG-CCGT 79864 || |||| | || || | ||| ||||| || || ||| || ||| ||| |||| Sbjct 17854807 AACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCG-GCGTCGATGTC-TCGCCCGT 17854750 Query 79865 GGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTCGCCGACATTCAGGTAGC 79924 |||| || || | || | ||||| | || ||| ||| |||| | || ||| || | Sbjct 17854749 GGATCCCAACTGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGA 17854690 Query 79925 CCTTCTGCAGG 79935 |||| ||||| Sbjct 17854689 TCTTCAGCAGG 17854679 Score = 345 bits (382), Expect = 5e-90 Identities = 875/1321 (66%), Gaps = 21/1321 (2%) Strand=Plus/Plus Query 19165 CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224 |||||| ||| |||| || |||||| ||||| ||||| | |||||||| ||||| Sbjct 17854775 CGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAA 17854834 Query 19225 CGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284 |||||| || ||| |||||| |||| ||||| ||||| | || |||||||| ||||| Sbjct 17854835 CGCCGGGACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAG 17854894 Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344 ||| || |||||||| || || || ||| ||||||| | ||| ||||||| | || || Sbjct 17854895 CATCGAAGGCATCTATGACACCCTGAAGCAGTGCGCTCTCATTTCCAAGTCCGCTGGCGG 17854954 Query 19345 TATCGGGATC-CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACG 19403 ||||| | | || | ||||| |||| || | ||| || || |||| Sbjct 17854955 GATCGGCGTGGCGGTGAGCTGC-ATCCGATCGACGGGAAGCTACATCGCCGGCACCAACG 17855013 Query 19404 GAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCA 19463 | || |||| | ||||| ||||| | || | |||||||||||| | |||||| Sbjct 17855014 GCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAACACGGCTCGCTACGTCG 17855073 Query 19464 ACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGG 19523 ||||||| ||| ||| | || | |||||||| ||||| ||||| |||||| | Sbjct 17855074 ACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTACCTGGAGCCGTGGCACTTCG 17855133 Query 19524 ACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCG 19583 |||| | || ||||| || ||| |||| || | |||||| | | | | Sbjct 17855134 ACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAG 17855193 Query 19584 ACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAG 19643 | || ||| ||||||||||| || ||||| |||||| ||| || |||| || | | Sbjct 17855194 ATCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGAAGAGAGTGGAGAGCAACCAGG 17855253 Query 19644 AATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGT 19703 | ||| | ||||||| || ||| || ||||| ||| ||| || || |||| || Sbjct 17855254 ACTGGTCCTTGATGTGTCCCAGCGAGTGTCCTGGGCTAGACGAGTGCTGGGGAGAGGAGT 17855313 Query 19704 TCAATGAGTTGT--ACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGC 19761 || | || | | ||| || | | || | || || | ||||||||||| ||| Sbjct 17855314 TCGAGAAGCTCTACACCAGATATGAGAAG--GAAGGGAGGGTGAAGAAGGTGGTAAAGGC 17855371 Query 19762 CCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTG 19821 | | | ||||| || | || || | |||| ||| ||||| || || |||||| Sbjct 17855372 GCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAAACCGGGACGCCCTACATGCT 17855431 Query 19822 CTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTC 19881 |||||||||||| ||| ||| || ||||||||| | ||| ||||||| | Sbjct 17855432 CTACAAGGACGCTTGCAACAGGAAGAGCAACCAGAAGAACCTGGGCACGATCAAATGCAG 17855491 Query 19882 CAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCT 19941 ||| || || || || | ||||| ||| ||| ||| ||||| || || || Sbjct 17855492 CAATCTCTGCACGGAGGTGGTGGAGTACACCAGCAAGGATGAGGTGGCCGTCTGCAACCT 17855551 Query 19942 GGCGTCCCTGTGCCTGCCGACTTTCGTCAAG-----GCCTCCTCCTTCGACTTTGCCAAA 19996 ||| ||| | ||| | | ||||| | || || |||||||| || Sbjct 17855552 GGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAGCGGACT--TTCGACTTCAAGAAG 17855609 Query 19997 TTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTT 20056 || | || ||| ||| || | || || || ||||||| |||| Sbjct 17855610 CTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCAACAAGATCATCGACATCAACTAC 17855669 Query 20057 TACCC-GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGT 20115 ||||| | || | | || | | ||| || | ||| ||| ||||||||| ||||||||| Sbjct 17855670 TACCCGGTCCCTGAAGCCGAG-ACGTCCAACAAGCGTCACAGGCCGATCGGGATCGGCGT 17855728 Query 20116 CCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCG 20175 |||||| |||||||||| ||||| || | | | | | ||||| ||| | || | Sbjct 17855729 CCAGGGTCTGGCCGACGCCTTCATCCTGATGCGGCACCCGTTCGAAAGCCCCGAAGCCCA 17855788 Query 20176 CGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGA 20235 |||||||| ||||||||| || | |||||||| ||||| || ||||| Sbjct 17855789 GCTGCTCAACATCCAGATCTTCGAGACCATCTACCACGCCGCCCTGGAGGCCAGCTGCGA 17855848 Query 20236 ACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTAT 20295 |||||| |||| |||||| |||||||||| | |||| ||||||| | |||| || Sbjct 17855849 GCTCGCCGCAGAGCTCGGCCCCTACGAGACGTACGAGGGCTCGCCCGTCAGCAAGGGCAT 17855908 Query 20296 CCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTGGAGC-----GC-CCTCAA 20349 |||||| |||||||||| || || || | ||| | || || || Sbjct 17855909 TCTCCAGTACGACATGTGGGAGAAGACGCCGACCGACCTGTGGGACTGGAAGCTGCTGAA 17855968 Query 20350 GGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGC 20409 || ||||| | || || | | ||| |||| | ||||||||||| || || Sbjct 17855969 GGAGAAGATCGCCAAACATGGCGTGAGGAACAGCCTGCTGCTGGCGCCCATGCCCACGGC 17856028 Query 20410 CTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTA 20469 || |||||||||||| |||| ||||||||| | ||||| ||||||| | ||||||||| Sbjct 17856029 GTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCGTACACCAGCAACATCTA 17856088 Query 20470 C 20470 | Sbjct 17856089 C 17856089 >seq21 Length=25773841 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| ||||||||||||||||| |||||| || || |||||||| || ||| | || Sbjct 1860806 CGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGG 1860865 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 ||| ||||| ||||||| ||| ||||||||| || ||| ||||||| Sbjct 1860866 CCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCCGAGACGAGG 1860915 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60345 AACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404 ||||| ||||||| ||||||| ||| || |||| |||||||||||||||||||||||| Sbjct 1861717 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAG 1861776 Query 60405 CGGGTCGGGGATTA 60418 ||||||||||| || Sbjct 1861777 CGGGTCGGGGAGTA 1861790 >seq11 Length=28875558 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 ||||| | ||||| ||| ||||| || || |||||||| ||||| || |||||| Sbjct 15203314 CGTCTTGTGGCTTTCGCAGCAGTGGAGGGGATTTTCTTCTCGGGCTCATTTGCTGCTATC 15203373 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 | |||||| || ||| | ||||||||||| ||||| | | ||||||||| || ||| | Sbjct 15203374 TACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTCATTAGC 15203433 Query 60102 CGGGACGAGG 60111 ||||||||| Sbjct 15203434 AGGGACGAGG 15203443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548505821041920