Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq13 230 3e-55 seq11 104 3e-17 seq19 93.3 5e-14 seq21 87.8 2e-12 >seq13 Length=33524197 Score = 230 bits (254), Expect = 3e-55 Identities = 480/701 (68%), Gaps = 12/701 (2%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || ||||| |||||||| || || || | || ||| || Sbjct 17854800 AAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCAGCTG 17854859 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| | || |||||||| ||| ||||| |||||||| || || || Sbjct 17854860 TCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATCTATGACACCCTG 17854919 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT-CCACTGCTCGAACGT 53445 ||| |||| || | ||| ||||||| | || || ||||| | | || | | | Sbjct 17854920 AAGCAGTGCGCTCTCATTTCCAAGTCCGCTGGCGGGATCGGCGTGGCGGTGAGC-TGCAT 17854978 Query 53446 CCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504 ||| || |||| | | | ||| || || |||||| | || | ||| | || || | Sbjct 17854979 CCGATCG-ACGGGAAGCTACATCGCCGGCACCAACGGCAACTCCAACGGATTGGTCCCGA 17855037 Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGG 53564 |||| | || | |||||||||||| || |||||| ||||||| || ||| | | Sbjct 17855038 TGCTGAGAGTTTACAACAACACGGCTCGCTACGTCGACCAGGGCGGCAACAAGAGACCCG 17855097 Query 53565 GGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624 || | |||||||| ||||| |||||||||||| |||| | | || || || |||||| Sbjct 17855098 GGGCCTTCGCCATGTACCTGGAGCCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGA 17855157 Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATT 53683 ||| || | || ||| | | | | || || || ||| || ||||||| Sbjct 17855158 AGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAGATCTTTTCTAC-GCCTTGTGGATC 17855216 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 || ||||| |||||| | | ||||||| || |||| |||| | ||||||| || | | Sbjct 17855217 CCTGACCTGTTCATGAAGAGAGTGGAGAGCAACCAGGACTGGTCCTTGATGTGTCCCAGC 17855276 Query 53744 GAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGT--ATCGGACG 53800 ||||| || || || | | ||| || || |||||||| | || | | | | || Sbjct 17855277 GAGTGTCCTGGGCTAGACGAGTG-CTGGGGAGAGGAGTTCGAGAAGCTCTACACCAGATA 17855335 Query 53801 TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATC 53860 | | || |||| | | |||||| ||| ||||||| || | ||| | || ||| Sbjct 17855336 TGAGAAG-GAAGGGAGGGT-GAAGAAGGTGGTAAAGGCGCAGCAGCTCTGGTACGCCATC 17855393 Query 53861 CTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAG 53920 || || |||| || || || ||||| |||||| ||||||||| | |||| | Sbjct 17855394 ATCGAGTCCCAGACCGAAACCGGGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGG 17855453 Query 53921 AAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAA 53961 |||||||||||||||||| | ||| ||||||| ||||| Sbjct 17855454 AAGAGCAACCAGAAGAACCTGGGCACGATCAAATGCAGCAA 17855494 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| ||||||| ||||| || ||||| || || |||||| |||||||||||||| | Sbjct 17856002 CCTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTC 17856061 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 ||||| ||||||| | |||||||||| ||| || || | || ||||| || Sbjct 17856062 CATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGAT 17856121 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAA 55671 ||||| |||||| ||||||||||| | || | | ||||||| | |||| || Sbjct 17856122 TGTCAACCCTCACCTCCTCAAGGACCTGACGGAGCGCGGCCTGTGGAACGAGGAGATGAA 17856181 Query 55672 GA 55673 || Sbjct 17856182 GA 17856183 >seq11 Length=28875558 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| |||||||| ||||| ||| || ||| ||||| || || Sbjct 1400909 GTGAAGATGTAACGGGGGCTGGCAGCATCTTTGCCTCCATTAATACGAGTACCAAACTGA 1400850 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| ||||| ||||| ||||||| |||||||||||| || || ||||| ||| Sbjct 1400849 CCCAGAGGCTGCAAGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCTAAGTTCACA 1400790 Query 117425 ATCGT 117429 || || Sbjct 1400789 ATGGT 1400785 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG- 152087 ||||||||||| |||| |||||| ||||| ||||| || | || || |||||||| Sbjct 1400909 GTGAAGATGTAACGGGGGCTGGCAGCATCTTTGCCTCCATTAATACGAGTACCAAACTGA 1400850 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| | || ||| | ||||||| |||||| || ||||| || || ||||| Sbjct 1400849 CCCAGA-GGCTGCAAGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCTAAGTTCAC 1400791 Query 152148 AATCGT 152153 ||| || Sbjct 1400790 AATGGT 1400785 >seq19 Length=28470737 Score = 93.3 bits (102), Expect = 5e-14 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | |||||||| || ||||| |||||||||||| Sbjct 23242030 GTGAAGATGTATCGAGGGCTGGCTGAGTCCTTGCCGCCGTGCAGCCTGGTTCCAAACTGT 23242089 Query 152089 -CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAA 152142 ||||| |||| || ||||| | ||||||| |||||| || ||||| || ||| Sbjct 23242090 CCCAGA-GGCTGCAGAAGGTTCATGTTGTTGCTGCCCACAAAGTTCTGGGCTAAA 23242143 >seq21 Length=25773841 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| ||||| |||||||||||||| |||| || ||||||||||| Sbjct 1861790 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 1861731 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 1861730 AAGTCGAACGGGTTCT 1861715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547197066326400