Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq13 251 8e-62 seq14 161 1e-34 seq11 82.4 9e-11 >seq13 Length=33524197 Score = 251 bits (278), Expect = 8e-62 Identities = 830/1267 (66%), Gaps = 44/1267 (3%) Strand=Plus/Minus Query 80540 CCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597 |||||||||||| ||| | ||||||| | |||| || || ||| || |||||||||| Sbjct 17855928 CCCACATGTCGTACTGGAGAATGCCCTTGCTGACG--GGCGAGCCCTCGTACGTCTCGTA 17855871 Query 80598 CGGGCCCTCCGTCTT-GGCCAGCTCACAC---GACTCCATAAGGGCCGCGTGATAAATGC 80653 ||||| | ||| ||| ||||| || | ||||| |||| ||||| || ||| Sbjct 17855870 GGGGCCGAGC-TCTGCGGCGAGCTCGCAGCTGGCCTCCA---GGGCGGCGTGGTAGATGG 17855815 Query 80654 ACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGT-CGAACGACAAGCCCATC 80712 ||| |||| |||| | | || | || ||| | | |||||| | |||| Sbjct 17855814 TCTCGAAGATCTGGATGTTGAG-CAGCTGGGCTTCGGGGCTTTCGAACGGGTGCCGCATC 17855756 Query 80713 ATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTC 80772 | ||||| |||| ||||| ||||| |||||||| ||||||| | ||| |||||||| Sbjct 17855755 AGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGACGCTTGTTG 17855696 Query 80773 GATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGT 80832 || |||||| || || | ||||| |||| | ||||||| ||| ||||| | Sbjct 17855695 GACGTCTCGGCTTCAGGGACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTT---T 17855639 Query 80833 GTAACAAC--CCGTG-TAACATCATGAAGTTTCTGAAAGTCGAA--TTGGTTCCC-CTTC 80886 | || | || || | || || |||| |||||||| | | || | | Sbjct 17855638 TTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTG 17855579 Query 80887 AC--AAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCA--GCATC 80942 || | ||| | ||| | ||| ||||| ||||| ||||||||||| || || Sbjct 17855578 ACGTACATGTTG--AGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCATCCTTGCTGG 17855521 Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 |||| ||| || | |||||||| | ||| | || || || |||||||| ||||| Sbjct 17855520 TGTA--CTCCACCACCTCCGTGCAGAGATTGCTGCATTTGATCGTGCCCAGGTTCTTCTG 17855463 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||| ||| ||||||||||||||||||| |||||| || || ||||| ||| ||| Sbjct 17855462 GTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTG 17855403 Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTC 81122 |||| || |||||||| ||| | || ||||||| |||||||| | | ||||| Sbjct 17855402 GGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTTACCACCTTCTTCACCCTCCCTTC 17855343 Query 81123 GGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTG 81181 | |||| ||| ||| |||||| ||||||| | || || || | | Sbjct 17855342 CTTCTCATATCTGGTGTAGAGCTTC-TCGAACTCCTCTCCCCAGCACTCGTCTAGCCCAG 17855284 Query 81182 GGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAG 81241 | |||||| | || ||||||| | |||||| || | |||| || ||||||||| Sbjct 17855283 GACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACA 17855224 Query 81242 CGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGT 81301 |||||||||||| | |||| ||| || || | | | | |||||| | || || Sbjct 17855223 GGTCAGGGATCCACAAGGCGTAGAAAAGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGT 17855164 Query 81302 TGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGA 81361 | || ||| || ||||| | | ||| ||||| |||||||| |||| ||||| Sbjct 17855163 TCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGA 17855104 Query 81362 TCGACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATA 81415 | ||| |||| ||| ||||||| |||||| || || || ||| | | Sbjct 17855103 AGGCCCCGGGTCTCTTG---TTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAA 17855047 Query 81416 CACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCT 81475 | | || ||| |||| | || | || | ||||| || || |||| ||| Sbjct 17855046 CTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTTCCCG 17854987 Query 81476 TGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCAC 81535 | | || | ||| | | | ||||| || || | |||| ||||| |||| | Sbjct 17854986 TCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGAGCGC 17854927 Query 81536 ACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAAC 81595 || | |||| ||| ||||| || || |||||||| || | |||||| | |||| ||| | Sbjct 17854926 ACTGCTTCAGGGTGTCATAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGC 17854867 Query 81596 AGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGA 81655 |||| |||| ||| || | || | ||||| ||||| || || || | ||||| ||| Sbjct 17854866 AGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGA 17854807 Query 81656 AATAACGGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTGA 81714 | | | |||| |||| ||||| || || | |||| | || || ||||| Sbjct 17854806 ACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCGGCGTCG-ATGTCTCGCCCGTGG 17854748 Query 81715 ATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCGCCTGCGTTCAGGTACATC 81774 || || | | || | ||| | ||||| ||| ||| |||| | | ||| || ||| Sbjct 17854747 ATCCCAACTGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATC 17854688 Query 81775 TTCTGCA 81781 ||| ||| Sbjct 17854687 TTCAGCA 17854681 >seq14 Length=28338960 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||| | || Sbjct 16346544 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 16346603 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| ||||| ||||| |||||||| || || || |||||| Sbjct 16346604 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 16346663 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 16346664 CAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 16346723 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||||| || ||| | ||||| | ||||| Sbjct 16346724 ATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTCAGGGGTGG 16346770 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || |||||||| || || || || ||||| ||| | | Sbjct 16346316 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGC 16346375 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || || || || ||||| |||||||| || || || |||||| Sbjct 16346376 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 16346435 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| ||| Sbjct 16346436 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAT 16346495 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| |||||||| || || || || | ||||| | ||||| Sbjct 16346496 ATCCAAAAAGAATCCACCCTCCACCTTGTTCTCCGTCTGAGGGGTGG 16346542 >seq11 Length=28875558 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||||| ||| | || ||||||||||| || || ||| ||||| | | |||| Sbjct 1400785 ACCATTGTGAACTTAGCCCAGAACTTTGTGGGCAGCAACAACGTGAACATCTTGCAGCC- 1400843 Query 32185 TCT-GGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 ||| || |||||||| || || | || ||||| |||||||| ||| |||||||||| Sbjct 1400844 TCTGGGTCAGTTTGGTACTCGTATTAATGGAGGCAAAGATGCTGCCAGCCCCCGTTACAT 1400903 Query 32244 CTTCACC 32250 ||||||| Sbjct 1400904 CTTCACC 1400910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570290667260160