Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq20 150 1e-31 seq9 96.9 3e-15 >seq20 Length=26385442 Score = 150 bits (166), Expect = 1e-31 Identities = 134/168 (80%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||||||| |||||||||| || || |||||||| ||||| || ||||| |||||||| || Sbjct 22734431 CATGTCCTTGTACTCTGCACCAAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGATC 22734490 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||||| ||||| | ||||||| ||||||| ||||| | ||| ||||||||||| Sbjct 22734491 CCCCTCCTCCCTCTCTGTGAAGCCCAGGTTGTCCAGGAAGTCACGGGACCCGTTGGCGTC 22734550 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||||||| || || ||||| || ||||| |||| ||||| || || Sbjct 22734551 CCAGATCTTCACTCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC 22734598 Score = 141 bits (156), Expect = 8e-29 Identities = 129/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || || | ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 22733549 AGTCCCGTAATGTGTGCAATCATGTAGGTGAGAAGTGCGTAGCTGGCGATGTTGAAAGGC 22733608 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| | || | |||||| |||||||| || ||||| ||||||| Sbjct 22733609 ACGCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 22733668 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGA 30104 ||||| |||||||| | ||||||||| || || || ||||||| Sbjct 22733669 ACGTAGAACTGACAGAGGGCGTGGCAGGGGGGCAGCGCCATGA 22733711 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 30114 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30173 |||||||||||||||| |||| |||||| || | |||||| ||||| ||| ||||| || Sbjct 22733795 CTTTGGGGTTCCAGGCACACATGATGATTCGTCGGTCTTCCGGGTTTTTCTTGATGGTGT 22733854 Query 30174 CCACGGCGTTTTGCAGCTGATCCACCCC 30201 | | | |||||||||||| || || || Sbjct 22733855 CGATGATGTTTTGCAGCTGGTCGACACC 22733882 >seq9 Length=34117797 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 110406 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 110465 || |||||||||||| | ||| |||||| | |||| || || ||||| || |||||||| Sbjct 30695142 CTTCCTGCTGAGGACGATGTTGATCCTGCCGTTCAGTGGCCTGTTCTTCTCTGGGATGGA 30695201 Query 110466 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 |||||| ||||| || ||||| || ||||| |||| | ||||| Sbjct 30695202 GAACCAGGTCTTCCTGCCCATGATTACCACATTCTTCCTGCCT 30695244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406296693118656