Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq20 136 4e-27 >seq20 Length=26385442 Score = 136 bits (150), Expect = 4e-27 Identities = 129/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| ||||| || ||||| || || |||||||| ||||| || | ||| Sbjct 22733561 TGTGCAATCATGTAGGTGAGAAGTGCGTAGCTGGCGATGTTGAAAGGCACGCCCAGACCC 22733620 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGAATTG 6738 ||||| | || || || || ||||| |||||||||||||| |||| ||||||||| || Sbjct 22733621 ATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCC-GTCGCAGACGTAGAACTG 22733679 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||| ||||| |||||||| | ||||| || Sbjct 22733680 ACAGAGGGCGTGGCAGGGGGGCAGCGCCATGATGGGGAGGTC 22733721 Score = 136 bits (150), Expect = 4e-27 Identities = 129/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAA 34623 || ||||| | |||||||| ||||| |||||| ||||||| || ||||||||| |||| Sbjct 22733721 GACCTCCCCATCATGGCGCTGCCCCCCTGCCACGCCCTCTGTCAGTTCTACGTCTGCGAC 22733662 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 |||||||||||||| ||||| || || || || | |||||||| | || ||||| || Sbjct 22733661 -GGGGAGCTGTCCTGTCAGCTGTACCAGCGCTCCGCCGACATGGGTCTGGGCGTGCCTTT 22733603 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||| || || ||||| || ||||| |||||||| || || Sbjct 22733602 CAACATCGCCAGCTACGCACTTCTCACCTACATGATTGCACA 22733561 Score = 109 bits (120), Expect = 5e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || |||||||| ||||| ||||| || || || || |||| || ||||||||| Sbjct 22734441 TACTCTGCACCAAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGATCCCCCTCCTCC 22734500 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | || ||| ||| | |||||||| ||||| || ||||||| ||||||||||||||| Sbjct 22734501 CTCTCTGTGAAGCCCAGGTTGTCCAGGAAGTCACGGGACCCGTTGGCGTCCCAGATCTTC 22734560 Query 7019 ACCCC 7023 || || Sbjct 22734561 ACTCC 22734565 Score = 109 bits (120), Expect = 5e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || ||||||||||||||||| ||||||| || ||||| |||||||| | ||| ||| || Sbjct 22734565 GGAGTGAAGATCTGGGACGCCAACGGGTCCCGTGACTTCCTGGACAACCTGGGCTTCACA 22734506 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 |||||||||| || |||| || || || || ||||| ||||| |||||||| || Sbjct 22734505 GAGAGGGAGGAGGGGGATCTGGGACCTGTGTATGGTTTCCAATGGAGGCACTTTGGTGCA 22734446 Query 34442 GAGTA 34446 ||||| Sbjct 22734445 GAGTA 22734441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448246890120960