Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq14 158 3e-33 seq12 158 3e-33 seq10 86.0 1e-11 >seq14 Length=28338960 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||||| ||||||||||| || || || | ||||| | |||||| Sbjct 16346527 AGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCT 16346468 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || |||||||| || | || ||||| ||| Sbjct 16346467 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 16346408 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| ||||| || |||||||| | || ||||| || ||||| || Sbjct 16346407 TGGATCTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTT 16346348 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| ||||| | |||||| || Sbjct 16346347 TTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 16346313 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| |||||||| || |||||||| || || | ||||| | |||||| Sbjct 16346755 AGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 16346696 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | | || |||||||| || | || ||||| ||| Sbjct 16346695 TCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 16346636 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || ||||| || ||||||||| | || ||||| || ||||| ||| Sbjct 16346635 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 16346576 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 16346575 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 16346544 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 16346983 AGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 16346924 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| || | || ||||| ||| Sbjct 16346923 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 16346864 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || |||||||| | || ||||| || ||||| || Sbjct 16346863 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTT 16346804 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 16346803 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 16346772 Score = 109 bits (120), Expect = 1e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| |||||||| || |||||||| || || | || || | |||||| Sbjct 16342528 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCT 16342469 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| || | || ||||| ||| Sbjct 16342468 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 16342409 Query 211023 TGGATCTT 211030 |||||||| Sbjct 16342408 TGGATCTT 16342401 Score = 89.7 bits (98), Expect = 1e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 |||||||| || || ||||| || | || |||||||| || | || ||||| |||||| Sbjct 16341314 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 16341255 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || || || || |||||||| | || ||||| || ||||| || || Sbjct 16341254 ATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTG 16341195 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || ||||| | |||||| || Sbjct 16341194 CCGGTGAGGGTTTTCACAAAGATCTGCATCTT 16341163 >seq12 Length=26439574 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| | |||||||| || |||||||| || |||| ||||| | |||||| Sbjct 2383308 AGCACCAGGTGGACGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCT 2383249 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| || | || ||||||||| ||| ||||| || ||| Sbjct 2383248 TCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCC 2383189 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| ||||||||| || ||||| ||| | || ||||| || ||||| ||| Sbjct 2383188 TGAATCTTTGCTTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 2383129 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| || || || || | |||||| || Sbjct 2383128 TTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 2383094 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 |||||||| || |||||||| || |||| ||||| | |||||||||||||| ||||| Sbjct 2383521 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 2383462 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| || | || ||||||||| ||| ||||| || ||||| |||||| ||| Sbjct 2383461 GCAAAGATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCCTGAATCTTTGCCTTC 2383402 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || ||||| ||| | || ||||| || ||||| ||||| || ||||| || Sbjct 2383401 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTT 2383342 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | |||||| Sbjct 2383341 TTCACAAAAATCTGCAT 2383325 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || |||| ||||| | |||||| Sbjct 2383632 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCT 2383573 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 |||||||| ||||| || ||||| || | || ||||||||| ||| Sbjct 2383572 TCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAAGAA 2383527 >seq10 Length=32819797 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || |||||||| || |||||||||||||||| | | ||| ||||||||| || ||| Sbjct 24724672 GGTAGAGGAGGGCAGTCTGCTCTGCGTTTTGCTCGTTTAAGAATGGAAAAGAGACATAAC 24724613 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT---CAAAGACAACAAGTGT 139938 ||| |||| ||||| || |||| ||| | ||| ||| | ||| |||| |||| | Sbjct 24724612 TACGTGAGGAAAGTCGCTGAGACCGCTGTCCAGCTCTTTGTGTCCAACGACA--AAGT-T 24724556 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || ||||| || || || || || ||||| | || | ||| Sbjct 24724555 AATGTGGCGGGAATGGTCTTGGCTGGCTCTGCTGATTTTAAGACTGAACTAAGTCAGTCT 24724496 Query 139999 GACTTTTTTGACCC 140012 ||| | |||||||| Sbjct 24724495 GACATGTTTGACCC 24724482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159110890674320