Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq14 102 7e-17 seq12 84.2 2e-11 >seq14 Length=28338960 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 ||||| || ||||| || || | || || || | || || ||||||||||| ||||| Sbjct 16342735 TCTTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAAG 16342676 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || || | ||||||||| | ||| | || ||| || ||| |||||| ||||| || Sbjct 16342675 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTC 16342616 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | || || || | |||||| |||| ||||| |||| || || || ||||| || Sbjct 16342615 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTGACG 16342556 Query 39274 AAGATTTGCAT 39284 ||||| ||||| Sbjct 16342555 AAGATCTGCAT 16342545 >seq12 Length=26439574 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||||| || | ||| ||| || || || || || || Sbjct 2383327 CATGCCTCCCCTGAGACGGAGCACCAGGTGGACGGTGGACTCCTTCTGGATGTTGTAGTC 2383268 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || || | || || ||||||||||| ||||| || || | ||||||||| | Sbjct 2383267 CGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGCTGGTCAGG 2383208 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACT 39232 | | || ||||| ||| ||| | | || ||| | || | | ||||| || | || Sbjct 2383207 AAGAATGCCTTCTTTATCC-TGAATCTTTGCTTTCACGTTCTCAATGGTATCACTGGGCT 2383149 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 |||| |||| ||||| | || || || || ||||| || || || |||||||| || Sbjct 2383148 CCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTTCAC 2383091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429531109279184