Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq12 104 2e-17 seq14 93.3 3e-14 >seq12 Length=26439574 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| ||||||||||| || || || ||||| || || || || || Sbjct 2383094 AAGATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCC 2383153 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||| | | ||| ||| ||| || |||||||| | | || || Sbjct 2383154 AGTGATACCATTGAGAACGTGAAAGCAAAGATTCAGGATAAAGAAGGCATTCTTCCTGAC 2383213 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| |||||||| |||||||| | ||||| | || ||| Sbjct 2383214 CAGCAGAGACTCATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTAC 2383273 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 2383274 AACATCCAGAAGGAGTCCAC 2383293 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||||||||| || || || ||||| || || || || ||| Sbjct 2383325 ATGCAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 2383384 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || ||| ||| || |||||||| | | || || || Sbjct 2383385 GATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCTTCCTGACCAG 2383444 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| |||||||| |||||||| | ||||| | || |||||| Sbjct 2383445 CAGAGACTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAAC 2383504 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 2383505 ATCCAGAAGGAGTCCAC 2383521 >seq14 Length=28338960 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || ||||| ||||| || || || || ||| Sbjct 16346772 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGC 16346831 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | || || || || | || || || || Sbjct 16346832 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGATAAGGAGGGCATCCCCCCTGACCA 16346890 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || |||||||| | ||||| | ||| ||||| Sbjct 16346891 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 16346950 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 16346951 CATCCAGAAGGAGTCCAC 16346968 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || ||||| ||||| || || || || ||| Sbjct 16342545 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGT 16342604 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| ||||| || || || || | || || || || Sbjct 16342605 GACACCATTGAGAACGTCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 16342664 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| |||||||| ||||| || | ||||| | || ||||| Sbjct 16342665 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAGGATGGCCGCACCCTCTCTGACTACAAT 16342724 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| ||||| Sbjct 16342725 ATCCAGAAAGAATCCAC 16342741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337998197246144