Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq14 122 2e-22 seq2768 109 1e-18 >seq14 Length=28338960 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| ||||| || || |||| ||||| |||| || || | |||||| Sbjct 16346983 AGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 16346924 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || || ||||| || Sbjct 16346923 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 16346864 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || |||||||| || ||||| || | ||||| || Sbjct 16346863 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTT 16346804 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 16346803 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 16346772 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| |||||||||||||||| |||||| || | || || | |||||| Sbjct 16346527 AGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCT 16346468 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || || ||||| || Sbjct 16346467 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 16346408 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || || || |||||||| || ||||| || | ||||| || Sbjct 16346407 TGGATCTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTT 16346348 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 16346347 TTGCCGGT 16346340 Score = 111 bits (122), Expect = 4e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| ||||||||||| |||| |||||| || | | || | ||||| Sbjct 16342756 AGAACAAGGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATCC 16342697 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || ||||| ||||| || | || ||||| || || || || ||||| || Sbjct 16342696 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 16342637 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || || || || |||||||| || ||||| || | ||||| || Sbjct 16342636 TGGAT-TTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 16342578 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||||| | ||| | ||||| Sbjct 16342577 TTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 16342545 >seq2768 Length=16538 Score = 109 bits (120), Expect = 1e-18 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || || |||| || ||||||||||| || || || ||| | || || Sbjct 5614 CAAATTTATAATGTAATCGTTACAGCTCATGCCTTTGTAATAATCTTTTTTATAGTCATA 5673 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || | || || || || ||||| |||||||| || || ||||| ||||| |||||||| Sbjct 5674 CCAATCATAATCGGAGGCTTCGGTAATTGATTAGTCCCATTAATAATTGGCGCTCCTGAC 5733 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 || |||||||| | | || |||||||| || ||| | |||| || || || Sbjct 5734 ATAGCTTTTCCCCGAATAAATAATATAAGCTTCTGACTTTTACCACCCTCATT 5786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192488906880992