Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq20 136 3e-27 seq9 87.8 1e-12 >seq20 Length=26385442 Score = 136 bits (150), Expect = 3e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || || | ||| || |||||||| ||||| || | ||||||||||||||| || ||| Sbjct 22733549 AGTCCCGTAATGTGTGCAATCATGTAGGTGAGAAGTGCGTAGCTGGCGATGTTGAAAGGC 22733608 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| | || | |||||| ||||| || || ||||| ||||||| Sbjct 22733609 ACGCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 22733668 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGA 29876 ||||| |||||||| | ||| ||||| || || || ||||||| Sbjct 22733669 ACGTAGAACTGACAGAGGGCGTGGCAGGGGGGCAGCGCCATGA 22733711 Score = 123 bits (136), Expect = 2e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||| ||||| || ||||| |||||||| || ||||| ||||| | |||| Sbjct 22734453 AAGTGCCTCCATTGGAAACCATACACAGGTCCCAGATCCCCCTCCTCCCTCTCTGTGAAG 22734512 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||| ||||| | ||| |||||||||||||||||||| || || ||||| Sbjct 22734513 CCCAGGTTGTCCAGGAAGTCACGGGACCCGTTGGCGTCCCAGATCTTCACTCCTTTCTCT 22734572 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || ||||| |||| ||||| || || Sbjct 22734573 GACAGCTCCTTGGCATTTGTTGATCC 22734598 Score = 87.8 bits (96), Expect = 1e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 29886 CTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 29945 ||||||||||||||||||||| |||||| || | |||||| ||||| ||| ||||| || Sbjct 22733795 CTTTGGGGTTCCAGGCACACATGATGATTCGTCGGTCTTCCGGGTTTTTCTTGATGGTGT 22733854 Query 29946 CCACGGCGTTTTGCAGCTGATCCACCCC 29973 | | | |||||||||||| || || || Sbjct 22733855 CGATGATGTTTTGCAGCTGGTCGACACC 22733882 >seq9 Length=34117797 Score = 87.8 bits (96), Expect = 1e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 114289 CTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 114348 || |||||||||||| | ||| | |||| | |||| || || ||||| || |||||||| Sbjct 30695142 CTTCCTGCTGAGGACGATGTTGATCCTGCCGTTCAGTGGCCTGTTCTTCTCTGGGATGGA 30695201 Query 114349 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 |||||| ||||| || ||||| || ||||| |||| | | ||| Sbjct 30695202 GAACCAGGTCTTCCTGCCCATGATTACCACATTCTTCCTGCCT 30695244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406149498084448