Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq11 313 2e-80 seq20 154 1e-32 >seq11 Length=28875558 Score = 313 bits (346), Expect = 2e-80 Identities = 256/311 (82%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 69007 GTCCAGAGGGGTCCAAACTGACCATAGGACCCGTTGAGGACACAGAGTATAAAGACAGGC 69066 |||||| ||| ||||||||||||| ||| | | |||||||||||||| || ||||||| Sbjct 6226496 GTCCAGTTGGGGCCAAACTGACCATTGGATCTCTGGAGGACACAGAGTACAAGGACAGGC 6226555 Query 69067 CTGCAGTGGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCA 69126 |||||||||||||||||||||||||||||||| | |||| | | |||| |||||| Sbjct 6226556 CTGCAGTGGTGAACGGATGGGGAAAGTTTTATCTTCCCAAACCAACAAAGATGGAGGTCA 6226615 Query 69127 TCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGG 69186 | || |||| | |||||| |||||| ||||||||||||||||||||||||||| |||| Sbjct 6226616 TAGGCTATGCAAAGGGAACAACATACCCATGTGACCAGCTTGTCCTGATGACCTGTGAGG 6226675 Query 69187 ACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATC 69246 |||||||||||||||||| ||| ||||| ||||||||| | |||||| || | | | Sbjct 6226676 ACCAGAAGGTGTACGGCTTTGATGGAGAGGAGCTGCATCTAGTGGCTTCCTCCCCGAGAC 6226735 Query 69247 AGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCT 69306 |||||| ||| ||||||||| ||||||||| |||||| ||||| | ||||||||||| Sbjct 6226736 AGATGGTCAGAGAGGGAATAGCCGATCCTGCATCCCAGAGTTATTACCCTGGGGAGGCCT 6226795 Query 69307 TCAAACATATG 69317 ||||| | ||| Sbjct 6226796 TCAAAGACATG 6226806 Score = 298 bits (330), Expect = 4e-76 Identities = 256/319 (80%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 68999 CCTACACAGTCCAGAGGGGTCCAAACTGACCATAGGACCCGTTGAGGACACAGAGTATAA 69058 ||||| ||| ||||| ||| || |||||||| |||| | | || ||||||||||| || Sbjct 6209692 CCTACCCAGACCAGATGGGCCCGTACTGACCAAAGGAACACTGGACGACACAGAGTACAA 6209633 Query 69059 AGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGAT 69118 ||||||||||||||||||||||||||||||||||||||| | |||| | | ||| Sbjct 6209632 GGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATCTTCCCAAAACAACAAAGAT 6209573 Query 69119 GCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGAC 69178 | |||| || || |||||| ||||||| | |||| |||||||||||||||| ||||||| Sbjct 6209572 GGAGGTTATTGGCTATGTGGAGGGAACTTCGTACCCATGTGACCAGCTTGTCYTGATGAC 6209513 Query 69179 CTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTG 69238 ||| ||||||||||||||||| |||| ||| ||||| ||||||||| ||||| || | | Sbjct 6209512 CTGTGAGGACCAGAAGGTGTAYGGCTTTGATGGAGAGGAGCTGCATCTGGTGRCTTTCAG 6209453 Query 69239 TCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGG 69298 ||| || ||||| || ||||||||| |||| ||| ||||||| ||||| | ||| Sbjct 6209452 GCTGCATGAGATGTTCACAGTGGGAATAGCCGATCCAGCACTCCAGAGTTATTACCGTGG 6209393 Query 69299 GGAGGCCTTCAAACATATG 69317 |||||||||||| | ||| Sbjct 6209392 RGAGGCCTTCAAARACATG 6209374 Score = 260 bits (288), Expect = 1e-64 Identities = 224/277 (81%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 69042 GAGGACACAGAGTATAAAGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATATC 69101 |||||||| ||||| || |||||||||||||||||||| |||||| ||||||||||| | Sbjct 6179987 GAGGACACGGAGTACAAGGACAGGCCTGCAGTGGTGAATGGATGGAGAAAGTTTTATCTT 6179928 Query 69102 CCCACCGCCGTGACGATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGAC 69161 |||| | | |||| |||| | || || || ||||||| |||| ||||||| Sbjct 6179927 CCCAAAACAACAAAGATGGAGGTTACTGGCTACATGGAGGGAACTTTGTACCTATGTGAC 6179868 Query 69162 CAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTG 69221 |||||||||||||||||||| |||||||||||||||||| ||| ||| ||||| |||||| Sbjct 6179867 CAGCTTGTCCTGATGACCTGTGAGGACCAGAAGGTGTACTGCTTTGATGGAGAGGAGCTG 6179808 Query 69222 CATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTC 69281 ||| |||||||| | | |||||||||||| | ||||||||| |||| ||| | Sbjct 6179807 CATCTGGTGGCTTTCAGCCTGGATCAGATGTTCACTGTGGGAATAGCCAATCCAGCACGC 6179748 Query 69282 CAGAGCTATTATCATGGGGAGGCCTTCAAACATATGA 69318 ||||| |||||||||||||||||||||||| | |||| Sbjct 6179747 CAGAGTTATTATCATGGGGAGGCCTTCAAAGACATGA 6179711 Score = 125 bits (138), Expect = 5e-24 Identities = 109/134 (81%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 69317 GACCAAGGAGGACTGGGAGAAGGTGAGGCAGAGCCCTGCGGGAAAAAGGTTGGATGAGGA 69376 |||||| ||||||||| ||||||| |||| |||||| ||| ||||||||||| ||||| Sbjct 6227327 GACCAAAGAGGACTGGTCGAAGGTGGAGCAGGGCCCTGTGGGGAAAAGGTTGGAAGAGGA 6227386 Query 69377 GCATCATAAACTGGTGGTGTCTCAAAAATCTGCACTGCTGAGGAATCTCAGAATCAGCAG 69436 ||||| ||| ||||||| |||| ||||| | | |||| |||||||| ||||| ||| Sbjct 6227387 GCATCGTAATCTGGTGGCTTCTCGCAAATCCGATTTCCTGAAGAATCTCAAAATCATCAG 6227446 Query 69437 ACAAA-ATAGAGGT 69449 ||||| | |||||| Sbjct 6227447 ACAAAGACAGAGGT 6227460 Score = 116 bits (128), Expect = 3e-21 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 68999 CCTACACAGTCCAGAGGGGTCCAAACTGACCATAGGACCCGTTGAGGACACAGAGTATAA 69058 ||||| ||| ||||| || || |||||||| |||| | | || ||||||||||| || Sbjct 6190233 CCTACCCAGACCAGATGGTGCCGTACTGACCAAAGGAACACTGGACGACACAGAGTACAA 6190174 Query 69059 AGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATATCCCCA 69105 ||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 6190173 GGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATCTTCCCA 6190127 Score = 104 bits (114), Expect = 2e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 69317 GACCAAGGAGGACTGGGAGAAGGTGAGGCAGAGCCCTGCGGGAAAAAGGTTGGATGAGGA 69376 |||||| ||||||||||||||||||| | || |||||| ||| | | | || ||||||| Sbjct 6209295 GACCAAAGAGGACTGGGAGAAGGTGAAGAAGGGCCCTGTGGGGACGATGCTGAATGAGGA 6209236 Query 69377 GCATCATAAACTGGTGGTGTCTCAAAAATCTGCACTGCTGAGGAATCTCAGA 69428 ||||| | ||||||||| ||||| |||||||| | ||| || ||||||| Sbjct 6209235 GCATCGTCAACTGGTGGCTTCTCACAAATCTGCCATCCTGCAGAGTCTCAGA 6209184 Score = 95.1 bits (104), Expect = 9e-15 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 69324 GAGGACTGGGAGAAGGTGAGGCAGAGCCCTGCGGGAAAAAGGTTGGATGAGGAGCATCAT 69383 ||||||||||||||||||| | || |||||| ||| | | | || |||||||||||| | Sbjct 6189691 GAGGACTGGGAGAAGGTGAAGAAGGGCCCTGTGGGGACGATGCTGAATGAGGAGCATCGT 6189632 Query 69384 AAACTGGTGGTGTCTCAAAAATCTGCACTGCTGAGGAATCTCAGA 69428 ||||||||| ||||| |||||||| | ||| || ||||||| Sbjct 6189631 CAACTGGTGGCTTCTCACAAATCTGCCATCCTGGAGAGTCTCAGA 6189587 >seq20 Length=26385442 Score = 154 bits (170), Expect = 1e-32 Identities = 135/168 (80%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||||| |||||||||| || || |||||||||||||| || ||||| |||||||| || Sbjct 22734431 CATGTCCTTGTACTCTGCACCAAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGATC 22734490 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||||| ||||| | ||||||| ||||||| ||||| | ||| ||||||||||| Sbjct 22734491 CCCCTCCTCCCTCTCTGTGAAGCCCAGGTTGTCCAGGAAGTCACGGGACCCGTTGGCGTC 22734550 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||||||| || || ||||| || ||||| |||| ||||| || || Sbjct 22734551 CCAGATCTTCACTCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC 22734598 Score = 136 bits (150), Expect = 3e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || || | ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 22733549 AGTCCCGTAATGTGTGCAATCATGTAGGTGAGAAGTGCGTAGCTGGCGATGTTGAAAGGC 22733608 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| | || | |||||| |||||||| || ||||| || |||| Sbjct 22733609 ACGCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 22733668 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGA 27370 ||||| |||||||| | ||||||||| || || || ||||||| Sbjct 22733669 ACGTAGAACTGACAGAGGGCGTGGCAGGGGGGCAGCGCCATGA 22733711 Score = 82.4 bits (90), Expect = 6e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 27139 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 27198 ||||| ||||| ||||||| ||||||||||||||||||||||| ||||||||||| || Sbjct 22733393 TTCAGAGGTTCGACGTGATTGAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAAGTCA 22733452 Query 27199 CCCGG 27203 || || Sbjct 22733453 CCGGG 22733457 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 27380 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 27439 |||||||||||||||| |||| |||||| || | |||||| ||||| ||| ||||| || Sbjct 22733795 CTTTGGGGTTCCAGGCACACATGATGATTCGTCGGTCTTCCGGGTTTTTCTTGATGGTGT 22733854 Query 27440 CCACGGCGTTTTGCAGCTGATCCACCCC 27467 | | | |||||||||||| || || || Sbjct 22733855 CGATGATGTTTTGCAGCTGGTCGACACC 22733882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369494734674608