Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq13 376 3e-99 seq14 91.5 2e-13 >seq13 Length=33524197 Score = 376 bits (416), Expect = 3e-99 Identities = 1244/1919 (65%), Gaps = 29/1919 (2%) Strand=Plus/Minus Query 77106 AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 77165 ||||| ||||| || || || || || ||||| |||| || || || ||||| || || Sbjct 17856139 AGGAGGTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTG 17856080 Query 77166 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGC 77225 ||||| || | || | || || ||||| |||| || || || || || || || ||| Sbjct 17856079 CTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGC 17856020 Query 77226 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATAT 77285 || || |||| || | || || || | |||||| | ||| || || || || Sbjct 17856019 ATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGC 17855960 Query 77286 TTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTA 77345 ||||| ||||| || || | || ||||| | ||||| || ||||| || || Sbjct 17855959 TTCCAGTCCCACAGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTG 17855900 Query 77346 CTAGCATATGATCCATTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAA 77402 || | || || | || || || || || || |||| | || || || || Sbjct 17855899 CTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTG---CGGCGAGCTCGCAG 17855843 Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT 77462 || || |||| || ||| || || || ||||| |||| | ||||| || ||| Sbjct 17855842 CTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCT 17855783 Query 77463 TCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCA 77522 || || || ||||| | | | || || ||||| || || | ||||| || || Sbjct 17855782 TCGGGGCTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCG 17855723 Query 77523 ATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTA 77582 || || || || || || | ||| ||||| | | ||||| || | || || || || Sbjct 17855722 ATCCCGATCGGCCTGTGACGCTTGTTGGACGTCTCGGCTTCAGGGACCGGGTAGTAGTTG 17855663 Query 77583 ATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGA 77642 ||||| || || || ||||| ||| | || | ||| || ||| || || Sbjct 17855662 ATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTG 17855603 Query 77643 AAATCAAATCTTCCATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAA 77699 || || || | | ||| | || ||||||| | || || || || || || || Sbjct 17855602 AAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAG 17855543 Query 77700 ACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTG 77759 || || ||||||| | ||| || | | | ||| || || ||||| || |||||| Sbjct 17855542 ACGGCCACCTCATCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGATTGCTGCATTTG 17855483 Query 77760 ATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAAC 77819 || |||||||| || | ||||||||||| | ||||| | |||||| || || || | Sbjct 17855482 ATCGTGCCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAG 17855423 Query 77820 GGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA-GCTTTTAT 77878 || ||||||||||| |||| || ||||| || | | ||||| | || || |||| Sbjct 17855422 GGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA-GCTGCTGCGCCTTTAC 17855364 Query 77879 CATAGATTTGTATCGCCTCTCT--CTT-TCATATTGAGTATATAGCCGTTCAAATTCATC 77935 || || | |||| || ||| |||||| || || ||| || || || || Sbjct 17855363 CACC---TTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTC 17855307 Query 77936 TCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATC 77995 |||||| || || | ||||| || || | || |||||||| |||||||| | Sbjct 17855306 TCCCCAGCACTCGTCTAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTT 17855247 Query 77996 TTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGT 78055 || |||| ||||| || || ||||| ||||| | || || ||||||| || Sbjct 17855246 GCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGATCTCTGGC 17855187 Query 78056 TCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATG 78115 ||| || || || |||||||| ||||| || || || || || || | | || | || Sbjct 17855186 TCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTG 17855127 Query 78116 CCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATA 78175 ||| || || || || || || | | || |||| || || || ||||| || | || Sbjct 17855126 CCACGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTA 17855067 Query 78176 TCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGT 78235 | || ||||| || |||||||||| ||| || | | ||||| || | || || || Sbjct 17855066 GCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGT 17855007 Query 78236 TCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGC 78295 || | || || ||||| | | || || || | | | || || || || || Sbjct 17855006 GCCGGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGC 17854947 Query 78296 CATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATC 78355 ||| || || |||||||| | |||| || || ||||| || || || ||||| || Sbjct 17854946 GGACTTGGAAATGAGAGCGCACTGCTTCAGGGTGTCATAGATGCCTTCGATGCTGTCGTC 17854887 Query 78356 CATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAA 78415 | ||||| || || || ||||| |||| || | | || || || || || | Sbjct 17854886 CTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAG 17854827 Query 78416 TGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGA 78475 |||||||| || || || ||||| || || || || || ||||| || || || || | Sbjct 17854826 GGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCGGC 17854767 Query 78476 TTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || ||||| | || || || || | || | ||| | ||| ||||| || | || Sbjct 17854766 GTCGATGTCTCGCCCGTGGATCCCAACTGACACCCTCATGAGCATGTGCTGCGGCCGCTC 17854707 Query 78536 AACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATA 78595 || || || || |||| || ||| || |||| ||| || || || || | Sbjct 17854706 GGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCGAAGAA 17854647 Query 78596 GTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGT 78655 |||||| || || ||||| |||||||| || ||||| || || |||| || | Sbjct 17854646 GTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAATTGAGGCGGTCCTTGTTTTCCAT 17854587 Query 78656 AACAATATCCA-TGACAGTAGTTGAA-ATAATAGGAGATCGTACACCATTTTT---AGGA 78710 || || || | || | | ||| | || || ||||| | | || || ||| Sbjct 17854586 GACGATGTCGAGTGTC--TCCTTGGAGATCATGGGAGAGTGG---CGTTTGTTCAGAGGG 17854532 Query 78711 TTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGT 78770 || || ||| || | |||||||| || || || || | || || || |||||||| Sbjct 17854531 TTGACGTAGGCGAACAGGTCTTCCATCACCTCGCTGAACACCTTCTTGGTCTCCTTGTGC 17854472 Query 78771 AGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAA 78830 || || || || || || || ||||| || || || || || || |||| || || Sbjct 17854471 AGGTTGGAGACGGCAATCCTCGCAGCCAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGG 17854412 Query 78831 GTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGT 78890 ||||| || || |||||||||| | |||| ||| | || ||||| || | || | Sbjct 17854411 GTGGCCGCAATCTCTGCCGCTAGCGTGTCTAGCTCCACGGTGGTGACGCCGCTGTACAAG 17854352 Query 78891 CCTTGAATAACTTTCATGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAA 78950 || || || || ||||||| ||| | ||||| ||||| || | ||||| || || Sbjct 17854351 CCCTGGATCACCTTCATGGTGATCTGAGTCGGATCCACAAAGTCCGGGTTCAGGCCGTAG 17854292 Query 78951 CATAATTTTCTA-ATACGAGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 || || |||| || || || ||||||||||| || || || ||||| || |||| Sbjct 17854291 CA-AAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGACGCGCTCCTGGCGCCCAT 17854234 >seq14 Length=28338960 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || || || || | || ||||| || || || ||||| || || ||||| || ||| Sbjct 9812843 GTGCCGGCGTTGAACAGGGTAGGAGAGGCGTGAGTGAACCACTTCTCTGAAAGCAGGTTG 9812902 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||| ||||| || ||||| | || ||||| || || || || | ||||| | Sbjct 9812903 TATGTTTCAACAGCTGCATCAATGTCTCCTTTGTGAATCCCGACTGCCACCCTCATCAGC 9812962 Query 78519 ATATGCTGAGGTCTTTCA 78536 || ||||| ||||| ||| Sbjct 9812963 ATGTGCTGGGGTCTCTCA 9812980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694644764459520