Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq14 134 3e-26 seq12 96.9 8e-15 >seq14 Length=28338960 Score = 134 bits (148), Expect = 3e-26 Identities = 168/227 (74%), Gaps = 10/227 (4%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || ||||| || ||||| || ||||||||||| |||| | || Sbjct 16346765 CCTGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 16346706 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | |||||||| || ||||| ||||| ||||| | |||||||||||| | | ||| Sbjct 16346705 GCGGCCATCTTCCAGCTGCTTT--CCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATG 16346648 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACT 152057 || ||||| || || ||||| ||||| |||| | | |||| ||| ||| || Sbjct 16346647 CCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCCACC 16346591 Query 152058 TCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| ||||| ||||| ||||||| |||||| Sbjct 16346590 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 16346544 Score = 125 bits (138), Expect = 2e-23 Identities = 165/227 (73%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| ||||| || || || || ||||||||||| ||||| || | | || Sbjct 16346537 CCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGT 16346478 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | |||||||| || ||||| ||||| ||||| |||||||||||||| | | ||| Sbjct 16346477 GCGGCCATCTTCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATG 16346420 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 || ||||| || || || || |||||| |||| | | |||| ||| || || Sbjct 16346419 CCCTCCTTATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCC 16346360 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || |||||||| ||||| ||||| || |||| |||||| || Sbjct 16346359 AGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 16346313 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| ||||| || || || ||||| || ||||||||||| |||| | || Sbjct 16346993 CCTAAGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 16346934 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || ||||| ||||| |||||||||||||| | | ||| || Sbjct 16346933 GCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 16346874 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || || || || ||| |||| | | |||| ||| || || || Sbjct 16346873 CTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAG 16346814 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| ||||| ||||| ||||||| |||||| Sbjct 16346813 GGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 16346772 Score = 123 bits (136), Expect = 6e-23 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||| ||||| || || || || ||||| ||||| ||||| || | | || Sbjct 16342766 CCTGAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGAGAGGGT 16342707 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||| || || ||| || || ||||| |||||||||||||| | | ||| || Sbjct 16342706 GCGGCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 16342647 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||||| || || ||||| |||||| |||| | | |||| ||| ||| || || Sbjct 16342646 CTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTC---ACTGGGCTCCACCTC 16342590 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| ||||| || || ||||||| |||||| Sbjct 16342589 CAGGGTGATGGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 16342545 Score = 96.9 bits (106), Expect = 8e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| | ||||| || ||||| || ||||||||||| |||| | ||| Sbjct 16342538 CCTGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 16342479 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || ||||| ||||| |||||||||||||| | | ||| || Sbjct 16342478 GCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 16342419 Query 152003 TTCCTTTTCTTGAATTTT 152020 ||||| || || || || Sbjct 16342418 CTCCTTATCCTGGATCTT 16342401 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| ||||| |||||||||||||| | | ||| || ||||| || || || || Sbjct 16341308 TTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTG 16341249 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| |||| | | |||| ||| || || || || || |||||||| ||| Sbjct 16341248 GCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTG 16341189 Query 152082 AGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| |||| |||||| || Sbjct 16341188 AGGGTTTTCACAAAGATCTGCATCTT 16341163 >seq12 Length=26439574 Score = 96.9 bits (106), Expect = 8e-15 Identities = 159/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||| || || || | || ||||| || ||||||||||| || | | || Sbjct 2383318 CCTGAGACGGAGCACCAGGTGGACGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGT 2383259 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| || || ||||| || ||||||||||| | || || Sbjct 2383258 GCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGCTGGTCAGGAAGAATGCC 2383199 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || ||||| ||| ||| || |||| | | | || ||| ||| || || Sbjct 2383198 TTCTTTATCCTGAATCTTTGCTTTCACGTTCTCAATGGTATC---ACTGGGCTCCACCTC 2383142 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || ||||| || |||||||| | |||||| || Sbjct 2383141 CAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 2383094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153779879745328