Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq14 145 2e-29 seq12 118 2e-21 seq2 93.3 9e-14 seq25 89.7 1e-12 seq23 89.7 1e-12 seq17 89.7 1e-12 >seq14 Length=28338960 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||| || || || || || | ||| |||||||||||| |||||||||| Sbjct 16346542 CCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGAC 16346483 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || || || || ||||||||||||| | || |||||| || Sbjct 16346482 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 16346423 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || |||||||| ||||| ||| | || || ||||| | || || Sbjct 16346422 ATGCCCTCCTTATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACC 16346363 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||| || || || || | ||||| || || |||||||| || Sbjct 16346362 TCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 16346313 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || || || ||||| || | ||| || || |||||||||||||| | Sbjct 16346771 ACCACCCCTGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 16346712 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||||||||| || || || || |||||||||||||| | || |||||| || Sbjct 16346711 CAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 16346652 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| || ||||| || || || ||| | || || ||||| | || || Sbjct 16346651 GATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCAC 16346592 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 16346591 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 16346544 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || || || || || || | ||| |||||| ||||| |||||||||| Sbjct 16342771 CCACCCCTGAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGAG 16342712 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || ||||| || |||||||||| | || |||||| || Sbjct 16342711 AGGGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 16342652 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || ||||| || ||||| ||| | || || ||||| | || || Sbjct 16342651 ATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 16342592 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || || || || | || || ||||| |||||||| Sbjct 16342591 TCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 16342545 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || || || || || || | ||| || || |||||||||||||| | Sbjct 16346998 CCACCCCTAAGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 16346939 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || || || || ||||||||||||| | || |||||| || Sbjct 16346938 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 16346879 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || |||||||| || || || | || || ||||| | || || Sbjct 16346878 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 16346819 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || || || || | ||||| ||||| |||||||| Sbjct 16346818 TCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 16346772 Score = 95.1 bits (104), Expect = 3e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || || || |||| || | ||| || || |||||||||||||| | Sbjct 16342544 ACCACCCCTGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 16342485 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||||||||| || || || || ||||||||||||| | || |||||| || Sbjct 16342484 CAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 16342425 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTT 283021 || |||||||| || |||||||| || || Sbjct 16342424 GATGCCCTCCTTATCCTGGATCTTGGCCTT 16342395 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 26511759 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 26511817 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 26523169 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 26523227 >seq12 Length=26439574 Score = 118 bits (130), Expect = 2e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || || || ||||| || | ||| || || |||||||||||||| | || |||||| Sbjct 2383314 AGACGGAGCACCAGGTGGACGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 2383255 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || ||||| || |||||||| | | || |||||| |||| || || Sbjct 2383254 CCATCTTCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGCTGGTCAGGAAGAATGCCTTCT 2383195 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 || || || ||||||||||| ||| | || || || || | || || || || ||| Sbjct 2383194 TTATCCTGAATCTTTGCTTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTG 2383135 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCA 283104 || ||||| || || | || || ||||| |||||||| |||| Sbjct 2383134 ATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTTCA 2383092 Score = 105 bits (116), Expect = 1e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | || ||||||||||| || || ||||| || |||||| Sbjct 2383515 TCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAG 2383456 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| | || |||||| |||| || || || || || |||||||| || ||| | Sbjct 2383455 ATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTC 2383396 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || || || | || || || || ||||| ||||| || || | || || || Sbjct 2383395 TCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACA 2383336 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 2383335 AAAATCTGCAT 2383325 >seq2 Length=46286544 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 26637051 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 26636993 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 26649056 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 26649114 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 7139692 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 7139634 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168752 ATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||| |||||||| ||||||||||| |||||||||| |||||||||| Sbjct 26638859 ATTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGATTCAATTCCC 26638803 >seq25 Length=1457224 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 83713 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 83771 >seq23 Length=18084596 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 6976892 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 6976950 >seq17 Length=30788009 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 8068706 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 8068648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046702077394272