Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq8 165 1e-35 seq9 136 6e-27 seq12 109 8e-19 >seq8 Length=27946405 Score = 165 bits (182), Expect = 1e-35 Identities = 204/278 (73%), Gaps = 1/278 (0%) Strand=Plus/Plus Query 8310 CCTTGA-CGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||||| ||||| | || || || ||| | | ||| | |||||||| | || || Sbjct 3284775 CCTTGAACGTTGTTGCAAACCAGCCTCTGCAGGGAGGCGGTGTTGACGATGTCAAAGCCG 3284834 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 || || || ||||||||||||||||||||| | || ||||| ||| ||| |||| Sbjct 3284835 ACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGCGAGCAAATGGGATTCCCCATC 3284894 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 ||||||||||||||||| |||||||||| ||| | || |||| || || |||||||| Sbjct 3284895 AGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACCATCGTCTCCCCAAAAATGGCGTTC 3284954 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548 | |||||||| ||||| | | |||| ||| ||||||||||| |||| ||| || || Sbjct 3284955 AGCCGGGGCTTCTCCACGAGCAGGCCGGGGTAGAGCTCCACAGCGTCGATGTCACCATAC 3285014 Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || | ||| ||| || || || || |||||||| Sbjct 3285015 AGCTCTTCCAGTATGGCGGCCATTTCTTTGTCTCCTGT 3285052 Score = 120 bits (132), Expect = 4e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||| ||||| || ||| || ||| ||| ||||| || Sbjct 3286356 TCACCAATAAGGATGAGCCGAGAAGTCTGAAAGAGTCTTTCATCATCCCAGTCTGGGTGA 3286415 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| |||| || || ||||||| |||||| || | ||||||||| |||||||||||| Sbjct 3286416 ACTTCCTTCAAAATGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATC 3286475 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 ||||| || || ||||| || || ||||| || || ||||| Sbjct 3286476 ATGAGGCCTGGGACCAGACCGAACGCCTCGTGGCCAACAGC 3286516 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 9905 AAGTCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTT 9964 || |||||| ||| || | ||| ||||| || || ||||| ||||| || | | Sbjct 3287314 AACTCACCTACGACTCCCATAGGGGTTGGGCAGTCCGCCGGAACTGGAGGAAGGGTACGA 3287373 Query 9965 GCGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAT 10024 | || ||||| || ||||| | |||||||||||| |||| | |||||||| ||||| Sbjct 3287374 GTATAGTAGGACAGGTTGGAATAGGCTTCCCAGCTTTTGTATCCATAGTCCGCATTGTAA 3287433 Query 10025 ATGGGAGGGCTGTCAATCAAATCGGATC 10052 | ||||| |||||||||| || ||||| Sbjct 3287434 GTAGGAGGACTGTCAATCATATGGGATC 3287461 >seq9 Length=34117797 Score = 136 bits (150), Expect = 6e-27 Identities = 180/250 (72%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 8301 ACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCC 8360 ||||||||| |||| ||| |||||| || | | ||| | | |||| ||| Sbjct 12530257 ACGGACACCACTTGGTGTTCAGACAGACCAGTTTTTTCAGAGTCGATGTTTTGATGATGT 12530316 Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 ||| ||| || || |||||||||||||||||||||||| |||| ||| |||| | Sbjct 12530317 TGAAGCCCGTCTCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGAGAGTTGATGGGAT 12530376 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 || | | |||||||| |||||||| || || |||| ||| | |||||||| ||||| | Sbjct 12530377 TCCCAAGCAGGCCTTTCAGGGAGAAAGGGGCTCCCATCTCCACCATGCTCTCTCCGAATA 12530436 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 ||| |||||| || | ||||||| || || |||| || | ||||| || || | || Sbjct 12530437 TGGAGTTGGGGCGAGCTTTTTCCATCATGAGGCCGGGATAAAACTCCAGGGCATCAATGT 12530496 Query 8541 CTCCGTAAAG 8550 | ||||| || Sbjct 12530497 CGCCGTAGAG 12530506 Score = 113 bits (124), Expect = 6e-20 Identities = 178/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || ||||||||||||| ||||||||||| || ||||| ||| ||| |||||||| Sbjct 12537627 CCAATAATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCATCATCCCAGGTCGGATGTTCG 12537686 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 ||||| | || ||||||| |||||| ||||| |||||||| ||||||||||| || Sbjct 12537687 CCCTTCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTG 12537746 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGG--CA 9412 || || || | || || || | || || |||| || || || | |||| | Sbjct 12537747 AGGCCTGGGATGAGTCCGAACACTTCCTGTCCGATGGCGAGCTGCTGCTCAGCGGGGAAA 12537806 Query 9413 CTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCAC 9472 ||| ||| || | ||||| ||| |||| || |||| ||| || ||||| || | Sbjct 12537807 CTT--TCAGGGTACACCATGTCCACTGGGACCTCAGACACCGGGGGAGGGTACATCTCCC 12537864 Query 9473 CGTCAATCATCTG 9485 ||| |||| ||| Sbjct 12537865 CGTTGATCAGCTG 12537877 >seq12 Length=26439574 Score = 109 bits (120), Expect = 8e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 || ||||| |||| || || | || ||||| ||||||||||||||||| | |||||| Sbjct 9127882 TTCACGATGTCGAAGCCGACTTTGCCTCCGAATGTGCTGGGCTTCCAGTATGCTGGGGAG 9127941 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 || ||| ||| ||| ||||||||||||||| || || || |||| || | ||||| Sbjct 9127942 CATATGGGGTTACCCAGGAGGCCTTTGAGGGAAAAGGGGGCGCCCATTTCCACCATGCTT 9128001 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || ||||| || || | || | ||| |||| || || |||| ||| | || | | Sbjct 9128002 TCTCCGAATATCGCCCCCGTTCGAGTCTTCTCCAGCAGTAACCCGGGGTAAAATTCAAGA 9128061 Query 8531 GCCTCGACGTCTCCGTAAAG 8550 || |||| || ||||| || Sbjct 9128062 GCGTCGATATCCCCGTAGAG 9128081 Score = 84.2 bits (92), Expect = 3e-11 Identities = 172/256 (67%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| |||| || || || |||||||| || ||||| || ||| ||||| Sbjct 9131761 TCACCGATGATGACAAGGCGGGTCGTCTGGAAAAGCTGCTCATCGTCCCAGGTCGGATGC 9131820 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| | |||| || || || || |||||||| ||||||||||| | |||||||||| Sbjct 9131821 TCTGCTCTCAGGACGTCACAGACTCTGTTGTGCTCCCTGAGCCACAGTGTGGCGTACAAA 9131880 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 | ||||| | || || || |||| ||||| | |||| | | | | || Sbjct 9131881 CCCAAACCAGGAAGGAGCCCGAACACCTCCTGACCAATGGCCATCTGTCTCTCCGCCGGG 9131940 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || ||||||| ||| |||| | | | | || || || || || |||||||| Sbjct 9131941 ACCCCGGGAGGGTAGCTCATCTTGATGGGAGCATCAGCTACAGATGGAGGGTACATTTCT 9132000 Query 9472 CCGTCAATCATCTGAT 9487 || || |||| ||||| Sbjct 9132001 CCATCGATCAACTGAT 9132016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716851996062720