Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq14 156 1e-32 seq12 154 4e-32 >seq14 Length=28338960 Score = 156 bits (172), Expect = 1e-32 Identities = 161/209 (77%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || ||||| || ||||| |||||||| |||||||| || ||| Sbjct 16346319 CAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGA--GCCCAGCG 16346376 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||||||| ||||| ||||| || || || ||||| || ||||||| Sbjct 16346377 ACACCATTGAGAACGTCAAAGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAGC 16346436 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| |||||||| ||||| |||||||| | || || | || || || Sbjct 16346437 AGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAATA 16346496 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||||| || || || |||||| Sbjct 16346497 TCCAAAAAGAATCCACCCTCCACCTTGTT 16346525 Score = 149 bits (164), Expect = 2e-30 Identities = 166/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| ||||| ||||| || ||||| |||||||| |||||||| || ||| Sbjct 16342548 CAGATCTTCGTCAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGA--GCCCAGTG 16342605 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||||||| || || ||||| || || || ||||| || ||||||| Sbjct 16342606 ACACCATTGAGAACGTCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAGC 16342665 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || |||||||| || ||||| | || || | || || || Sbjct 16342666 AGAGGCTGATCTTTGCTGGCAAACAGCTGGAGGATGGCCGCACCCTCTCTGACTACAATA 16342725 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| |||||||| || || || |||||| | | ||||| Sbjct 16342726 TCCAGAAAGAATCCACCCTCCACCTTGTTCTCCGTCTCAG 16342765 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || ||||| || || || |||||||| |||||||| || ||| Sbjct 16346547 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 16346604 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| || || ||||| || || || ||||| || ||||||| Sbjct 16346605 ACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAGC 16346664 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| |||||||| ||||| |||||||| | || || |||| || ||| Sbjct 16346665 AGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 16346724 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 16346725 TCCAGAAGGAGTCCACCCTTCACCTGGT 16346752 >seq12 Length=26439574 Score = 154 bits (170), Expect = 4e-32 Identities = 153/196 (78%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || |||||||||||||| ||||| || || || |||||||| ||||||| ||| || | Sbjct 2383100 CAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGG--AGCCCAGTG 2383157 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| |||||||| ||| |||||||||||| |||||||| || | ||| ||||||| Sbjct 2383158 ATACCATTGAGAACGTGAAAGCAAAGATTCAGGATAAAGAAGGCATTCTTCCTGACCAGC 2383217 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | |||| ||||| || || |||||||| |||||||| | || || | || || ||| Sbjct 2383218 AGAGACTCATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAACA 2383277 Query 178102 TCCAAAAAGAATCAAC 178117 |||| || || || || Sbjct 2383278 TCCAGAAGGAGTCCAC 2383293 Score = 147 bits (162), Expect = 5e-30 Identities = 156/203 (77%), Gaps = 5/203 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||| |||||||| ||||| || || || |||||||| |||||||| || ||| Sbjct 2383328 CAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 2383385 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| |||||||| || |||||||||||| |||||||| || | ||| ||||||| Sbjct 2383386 ATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCTTCCTGACCAGC 2383445 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | |||| ||||| || || |||||||| |||||||| | || || | || || ||| Sbjct 2383446 AGAGACTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAACA 2383505 Query 178102 TCCAAAAAGAATCAACACTGCAT 178124 |||| || || || || | |||| Sbjct 2383506 TCCAGAAGGAGTCCAC-CNGCAT 2383527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203688509672992