Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20reticulata_20[refseq_20GCF_5F000633615.1_202014-04-28] 2,768 sequences; 731,622,281 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq14 145 7e-30 seq12 114 1e-20 >seq14 Length=28338960 Score = 145 bits (160), Expect = 7e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || ||| ||||||||| ||||| |||||||| |||||||| Sbjct 16346989 AGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 16346930 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| ||||| | ||| | || |||| Sbjct 16346929 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 16346870 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | |||||||| | ||||||||||| || Sbjct 16346869 TTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTG 16346810 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || || || ||||| ||||| |||||||| Sbjct 16346809 ATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 16346772 Score = 134 bits (148), Expect = 1e-26 Identities = 165/223 (74%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || ||| ||||||||| ||||| |||||||| |||||||| Sbjct 16346761 AGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 16346702 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| ||||| || |||| | ||| ||||| | ||| | || |||| Sbjct 16346701 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCC 16346642 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGA-CACA---GTGTCGCTCGACTCCACCTCCAC 41820 || ||| |||||| ||| |||| | || ||||| || | ||||||||||| Sbjct 16346641 TTATCCTGGATTTTGGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAG 16346586 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || || || || ||||| ||||| ||||||||| Sbjct 16346585 GGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 16346543 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || ||| || ||||| || || ||||| ||||||||||| Sbjct 16342762 AGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGAGAGGGTGCGG 16342703 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || || ||||| | ||| ||||| | ||| | || |||| Sbjct 16342702 CCATCCTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 16342643 Query 41765 TTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || ||| || |||| |||| ||| | | ||||| || | ||||||||||| || Sbjct 16342642 TTATCC-TGGATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGT 16342584 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || || || || || ||||| |||||||| Sbjct 16342583 GATGGTTTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 16342545 Score = 118 bits (130), Expect = 1e-21 Identities = 161/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || ||| || || || || || ||||| || |||||||| Sbjct 16346533 AGACGGAGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGG 16346474 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| ||||| || ||||| | ||| ||||| | ||| | || |||| Sbjct 16346473 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 16346414 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| || |||| ||| || | ||||||| | ||||||||||| || Sbjct 16346413 TTATCCTGGATCTTG-GCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGT 16346355 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| || || || ||||| || || ||||||||||| Sbjct 16346354 GATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 16346313 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||| || || ||| ||||||||| ||||| |||||||| || ||||| Sbjct 16342534 AGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGG 16342475 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| ||||| | ||| | || |||| Sbjct 16342474 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 16342415 Query 41765 TTGTCCATGATTTT 41778 || ||| ||| || Sbjct 16342414 TTATCCTGGATCTT 16342401 >seq12 Length=26439574 Score = 114 bits (126), Expect = 1e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||| || | ||| ||||||||| ||||| ||||| || |||||||| Sbjct 2383314 AGACGGAGCACCAGGTGGACGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 2383255 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || || || || | ||| ||||| | ||| || || Sbjct 2383254 CCATCTTCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGCTGGTCAGGAAGAATGCCTTCT 2383195 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| | ||||||| ||| || | | || || | ||||||||||| || Sbjct 2383194 TTATCC-TGAATCTTTGCTTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGT 2383136 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || || || || |||||||||||||| || Sbjct 2383135 GATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 2383094 Score = 100 bits (110), Expect = 3e-16 Identities = 148/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 41659 ATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTG 41718 |||| | ||| ||||||||| ||||| ||||| || |||||||| | || || ||||| Sbjct 2383527 ATGCNG-GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTG 2383469 Query 41719 CTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 ||||| || || ||||| | ||| ||||| | ||| || || || ||| ||| | | Sbjct 2383468 TTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAAGAATGCCTTCTTTATCC-TGAATCT 2383410 Query 41779 TTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCG 41837 |||| | ||| || | | || || | ||||||||||| || || || || || | Sbjct 2383409 TTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAG 2383350 Query 41838 TCAGCGTCTTTACGAAAATCTGCATG 41863 | || || || || |||||||||||| Sbjct 2383349 TGAGGGTTTTCACAAAAATCTGCATG 2383324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462288004281600