Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq238055 91.5 3e-13 seq444848 89.7 1e-12 seq253432 89.7 1e-12 seq238054 89.7 1e-12 seq192246 89.7 1e-12 seq140745 89.7 1e-12 seq138847 89.7 1e-12 seq113143 89.7 1e-12 seq41456 89.7 1e-12 seq3370 89.7 1e-12 seq8517 84.2 5e-11 seq2548 84.2 5e-11 >seq238055 Length=523 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 374 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 433 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 434 CCCCACGTTGGGC 446 >seq444848 Length=522 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 148 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 89 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 88 CCCACGTTGGGC 77 >seq253432 Length=930 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 147 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 88 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 87 CCCACGTTGGGC 76 >seq238054 Length=789 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 650 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 709 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 710 CCCACGTTGGGC 721 >seq192246 Length=1030 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 882 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 941 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 942 CCCACGTTGGGC 953 >seq140745 Length=1021 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 149 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 90 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 89 CCCACGTTGGGC 78 >seq138847 Length=925 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 779 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 838 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 839 CCCACGTTGGGC 850 >seq113143 Length=821 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 149 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 90 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 89 CCCACGTTGGGC 78 >seq41456 Length=1434 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 147 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 88 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 87 CCCACGTTGGGC 76 >seq3370 Length=3486 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 149 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 90 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 89 CCCACGTTGGGC 78 >seq8517 Length=384 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGT-CGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||| |||||||||| ||||||||| ||||| ||||||| ||||||||||||||| Sbjct 153 GCCCGGCTAGCTCAGTTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 212 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 213 CCCCACGTTGGGC 225 >seq2548 Length=522 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGT-CGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||| |||||||||| ||||||||| ||||| ||||||| ||||||||||||||| Sbjct 85 GCCCGGCTAGCTCAGTTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 144 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 145 CCCCACGTTGGGC 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1050701676958260