Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_001604.1 Length=39937 Score E Sequences producing significant alignments: (Bits) Value seq512931 114 3e-21 seq515320 105 2e-18 >seq512931 Length=538 Score = 114 bits (126), Expect = 3e-21 Identities = 359/545 (66%), Gaps = 52/545 (10%) Strand=Plus/Plus Query 37768 TCCTGACCACT-CTCCTAGTGTGAAATCAGTAGGTATCACTGGTCAGT-TAACTGGTAGC 37825 |||||||||| | ||| | ||||| || || ||| | ||||| | || | ||||||||| Sbjct 9 TCCTGACCACAGCCCCTCG-GTGAAGTCCGTGGGTGTTACTGG-CGGTATGACTGGTAGC 66 Query 37826 CGTGCTGACATTATCATTGCGGATGACGTTGAGATTCCGTCTAACAGCGCAACTATGGGT 37885 ||||||||||| |||||||||||||||||||| | || ||| | || | Sbjct 67 CGTGCTGACATCCTCATTGCGGATGACGTTGAGGTCCCCGGCAACTCTGGCACACAGTCC 126 Query 37886 GCCCGTGAGAAGCTATGGACTCTGGTTCAGGAGTTCGCTGCGTTACTTAAACCGCTGCCT 37945 || | || | || | ||||| |||| |||| |||| | || || |||| Sbjct 127 GCAAGGGATCACCTTGGCGAGCTGGTAAAGGAATTCGATGCGATCCTGAA------GCCT 180 Query 37946 TCCTCTCGCGTTATCTACCTTGGTACACCTCAGACAGAGATGACTCTCTATAAGGAACTT 38005 | | | |||||| | || || || ||||| || ||||| ||||| | ||||||| Sbjct 181 GACGGTACGATCATCTACTTGGGAACCCCACAGACCGAAATGACCCTCTACAGGGAACTT 240 Query 38006 GAGGATAACCGTGGGTACACAACCATTATCTGGCCTGCTCTGTACCCAAGGACACGTGAA 38065 ||||| ||| || ||| | || | ||||||||||| | ||||| || | ||| Sbjct 241 GAGGA---CCGCGGCTACTCGACGACGATCTGGCCTGCACGATACCCTCGGG-ATGTG-- 294 Query 38066 GAGAACCTCTATTACT-----CAC----------AGCG------TCTTGCTCCTA---TG 38101 | |||| | | || ||| |||| ||| | | || || Sbjct 295 GCTGACCTTGAGTCCTACTGGCACGCCAAGGGCAAGCGCTCACGTCTGGACCTTACCATG 354 Query 38102 TT--ACGCGCTG-AGTACGATGAGAACCCTGAGGCACTTGCTGGGACTCCAACAGACCCA 38158 | | | |||| | |||| ||||| | || | |||| | || |||||||| Sbjct 355 CTCAAGGAGCTGGAAGACGACGAGAAGC-TG-------TTCTGGAAG-CCTACAGACCCT 405 Query 38159 GTGCGCTTTGACCGTGATGACCTGCGCGAGCGTGAGTTGGAATACGGTAAGGCTGGCTTT 38218 | || || || ||| |||||||| ||||| || | ||| || |||| |||||| Sbjct 406 ATTCGATTCGATGATGAAGACCTGCGTGAGCGCGAACTCTCATATGGCAAGGGTGGCTTC 465 Query 38219 ACGCTACAGTTCATGCTTAACCCTAACCTTAGTGATGCCGAGAAGTACCCGCTGAGGCTT 38278 | |||||||||||||| ||||| |||||||| || ||||||||||||| ||| ||| Sbjct 466 GCTCTACAGTTCATGCTCAACCCGAACCTTAGCGACATCGAGAAGTACCCGTTGAAGCTG 525 Query 38279 CGTGA 38283 ||||| Sbjct 526 CGTGA 530 >seq515320 Length=237 Score = 105 bits (116), Expect = 2e-18 Identities = 129/175 (74%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 13020 CTACGTGGTTCTGGCGCACTACGCCAACTATCTGATACTATTATTGCCCTTGAGCGTAAT 13079 || |||||||| || || | ||||| || |||||| |||| ||| ||||| | ||| Sbjct 16 CTTCGTGGTTCAGGTTCAATTGCTCAACTCTCAGATACTGTTATAGCCTTTGAGAGGAAT 75 Query 13080 CAGCAAGGCGATATGCCTAACCTTGTCCTCGTTCGTATTCTCAAGTGCCGCTTTACTGGT 13139 |||||||| | |||||| ||| | | | || | ||||| |||||||| ||| Sbjct 76 CAGCAAGGGAGCAGTCCTAACAAGGTCTTGATAAGAATCTTAAAGTGTCGCTTTACAGGT 135 Query 13140 G-ATACTGGTATCGCTGGCTACATGGAATACAACAAGGAAACCGGATGGCTTGAA 13193 | | |||||||| || |||||| || | ||||| ||||||| |||||||||||| Sbjct 136 GAAAACTGGTATAGCAGGCTACTTGAATTACAATCAGGAAACTGGATGGCTTGAA 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126880053836676