Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq44246 396 3e-105 seq496362 163 3e-35 seq388653 113 5e-20 seq103378 91.5 2e-13 >seq44246 Length=4029 Score = 396 bits (438), Expect = 3e-105 Identities = 1160/1780 (65%), Gaps = 14/1780 (1%) Strand=Plus/Minus Query 53132 AGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 53191 || ||||| || || || | || || ||||| |||| || | || ||||| || || Sbjct 1774 AGCAGATGGGGGTTGACGATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTG 1715 Query 53192 CTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 53251 ||||| || | || | ||||| || || |||| || || || || || || || ||| Sbjct 1714 CTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGC 1655 Query 53252 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGT 53311 || || |||| || | || || || | |||| | ||| || || || || | Sbjct 1654 ATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGC 1595 Query 53312 TCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGT 53369 | ||| | ||| || || | || | | | || || || || | Sbjct 1594 TTCCAGTCCCACAGGTCGGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCT 1537 Query 53370 TACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAAC 53429 | ||| || || ||| | || || ||||| || || || | || ||||| || | Sbjct 1536 TGCTGACGGGGGAGCCT-CGTACGTGTCGTAGGGGCCCAGCTCGGCGGCCAGTTCGCAGC 1478 Query 53430 TCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTT 53489 | ||||| | || |||| || ||||| || ||||||| | || || || || | Sbjct 1477 TGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCT 1418 Query 53490 CCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAA 53549 | |||| ||||| || ||| | || || || ||||| || | || || || || | Sbjct 1417 CGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGA 1358 Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609 ||||||| || || || | ||| || || || || || || | || || | |||| Sbjct 1357 TACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGCACCGGGTAGAAGTTAA 1298 Query 53610 TATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 53669 | ||||| || || || ||||| | || || |||||| |||| || |||||| | Sbjct 1297 TCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAGACTCCAGTTTCTTGA 1238 Query 53670 AATCAAATTGTCCA-TCTA---TTACAAACATGTTCAATGCAATAGATGCCAGATTACAA 53725 | ||||| |||| || | || ||||||| | || || || ||||||||||| Sbjct 1237 AGTCAAAA-GTCCGCTCGGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACAC 1179 Query 53726 ACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTG 53785 || || ||||||| || | |||| | || || ||||| || || || |||||| Sbjct 1178 ACAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCTGCACTTG 1119 Query 53786 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAT 53845 |||||||| | || || || || ||||| |||| || || || || || || ||| | Sbjct 1118 ATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTAC 1059 Query 53846 GGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATT 53905 ||||| || | || ||||||| || || || || | ||| || ||||||| | Sbjct 1058 GGCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACACCTGCTGAGCCTTCACC 999 Query 53906 ATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCC 53965 | | ||| | || | || ||| | || || | |||||||| || ||| Sbjct 998 ACACGCTTGACCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTTCTCAAACTCCTCCCCC 939 Query 53966 CAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 54025 || | ||||| || || | || |||||||||| ||||| || || | Sbjct 938 CAGCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTC 879 Query 54026 TTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCT 54084 | ||| | ||||| || || || || ||||| | ||| || || |||||||||| ||| Sbjct 878 TCCACCCTCTTCATGAACAGGTCGGGGATCCACA-AGCCGTAGAAGAGATCTCTGGCTCT 820 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || ||||| || || || ||||| || || || ||||| | | | ||| | ||||| Sbjct 819 CTGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCA 760 Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 54204 ||| |||| ||| |||| | | || || || ||||| || ||||| || | || | Sbjct 759 CGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTGCCGCCCTGGTCGACATAGCG 700 Query 54205 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCC 54264 || ||||| || || || |||| ||| || | | || ||||| || ||||| || Sbjct 699 TGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTTGGAGTTGCCGTTGGTGCC 640 Query 54265 GGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCAT 54324 || ||| ||||| || ||| || || || | | | ||| || || |||||| Sbjct 639 GGCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCACACCGATTCCTCCTGCCGA 580 Query 54325 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 54384 || ||||| | ||| || | || | ||| || ||||||||||| || || || ||| | Sbjct 579 CTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTT 520 Query 54385 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 54444 |||| | || || || ||||| || | || | || | ||||| || || || | || Sbjct 519 CATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGGTTGGTTCCTGCGTTGAAGAGCGT 460 Query 54445 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTC 54504 || || ||||| || ||||| || || || || || ||||| |||||||| || | ||| Sbjct 459 GGGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGGTTGTAGGTCTCGATGGCGGCGTC 400 Query 54505 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 54564 |||||| | || ||||| || | || | ||| | ||||||||| || | || | Sbjct 399 GATATCCGTCTTGTGGATTCCGACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCCGC 340 Query 54565 GATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 54624 | ||| ||| || ||||||| ||||||| |||| || || || || || |||| Sbjct 339 CACTTTGCCGTTGATCTTCAGCAGGTAGGATCGCTCCAGCGTCTTGAAGCCGAAGAAGTT 280 Query 54625 GTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAAC 54684 ||| || || |||| ||| | || || | |||||||| ||||| | | ||| Sbjct 279 GTAGGAGAAATCTCTGTCGAAGATGATGGCCGAGTTGAGGCGGTCCTTGTGGGCGAGAAC 220 Query 54685 TACATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACAT 54743 | || | ||| | ||| || || || || || || | || ||| |||| | Sbjct 219 GATGTCGAGGGT-CTCCTTGGAGATCATGGGGGAGTGGCGTCTGTTCAGAGGGTTGATGT 161 Query 54744 AGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTG 54803 || | | | |||| |||||| ||||| || | || || || || ||||| || || | Sbjct 160 AGCTGTACAGGTCCTCCATCACCTCACTGAAAACCTTCTTCGTCTCCTTGTGCAGGTTGG 101 Query 54804 ATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTG 54863 | ||||| || | ||||| || ||||| || ||||| |||| || || ||||| | Sbjct 100 AGACGGCGATCCGGGCGGCGAGGATGGCGTAGTCCGGGTGTTTGGTGGTGAGGGTGGCGG 41 Query 54864 CTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTAC 54903 || || || | ||| ||||||| || || || || || Sbjct 40 TGATCTCTGCAGCCAGGGTGTCCAGCTCCACGGTGGTGAC 1 >seq496362 Length=882 Score = 163 bits (180), Expect = 3e-35 Identities = 403/597 (68%), Gaps = 22/597 (4%) Strand=Plus/Minus Query 24137 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 24196 ||||||||| ||||| | ||| ||||| | | ||| |||||||| || || || | ||| Sbjct 631 TGCGAAATCACAGTGAACACCTTCGTCACGAGAAATCAATTCGTTTGAGAATGTCAATCC 572 Query 24197 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 24256 ||||| | || || ||||| | ||| || ||||| ||| | || || |||||||| Sbjct 571 TGGCATCAAACCTCGTTTTTTCAACCAGAAAATGGAACAAAAAGCACCTGAGAAGAAAAT 512 Query 24257 TCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCA 24316 |||||| ||||| ||||| ||||| | || ||| | || | ||| || ||||| Sbjct 511 TCCTTCCACTGCTGCAAAAGCAATCAATCGCTCTGCGAAA--GAATCTG-AATCAATCCA 455 Query 24317 CTTTTGA---GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 |||| ||||| || || |||||||| | | ||| | |||| || || || Sbjct 454 ---TTGAATTGCCCAGTCCGCTTTCTTTTTGATAGCAGGAAAAACTTCTAATGCGTTGAA 398 Query 24374 GAGATAGtttttttCATTACT--ATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 | || | ||| || | || ||||| ||||| || || || || | |||| || Sbjct 397 TAAATCGGCTTTCTC--TGCTTCGTCTTTTACATAAGTGTCGATTAACAAGGAATACGTT 340 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA-CATCTAGCCTCGGTAAT 24490 || ||||| ||||| || ||||| || || |||||| || | || || | | Sbjct 339 TCGCTGTGAATATTTTCCATCATGATTTGGAAACCATAGAAAGAATTTCGCTTCAGCATA 280 Query 24491 CTGTACTTC-TATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 || ||||| | |||||| | ||| || | ||||||||| || |||||||| || | Sbjct 279 TTGCACTTCATTTACAAAGT-TTTCAGCAAGATTTTCATTTACAATTCCGTCTGAAGCGG 221 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGT--TTATTC 24605 | ||||| || || | ||||| ||||| |||| ||||||| | || | | |||||| Sbjct 220 CGAAAAATGCTAAAATGTGTTTGATAAAGTATTGTTCGTCT-TTATTCAACTTGTTATTC 162 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 || || || | ||||| || | ||| | |||||| | ||||| || | ||| Sbjct 161 CAGTCGTTTAAATCTTGTGACAAATCAATTTCTTCGGCAGTCCAGAA-ACTCGCTCCATG 103 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTT 24722 |||||| | | ||| || || || | | || |||||||| ||||| | |||| Sbjct 102 GATTTATAAAATTCCCAAATATCTTGGTGCTTGATCGGAAAAATGACAAAACGATTT 46 >seq388653 Length=382 Score = 113 bits (124), Expect = 5e-20 Identities = 261/386 (68%), Gaps = 8/386 (2%) Strand=Plus/Minus Query 53721 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA-AAGATT-ACT 53778 |||| || ||||| |||| || | | |||| || ||||| || || ||| || || Sbjct 382 TACACACTGCTACTTCATCAGGAGAGGTGTATTCCATGATCTCTGTACACAAGTTTGACG 323 Query 53779 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 53838 | || || ||||||||||| | ||| || || ||| |||||| ||||| | Sbjct 322 A-ACGA-ATAGTTCCTAAATTCTTTTGGTTTGATTTACGGTTTGCCGCATCTTTATATAA 265 Query 53839 AATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGC 53898 || | || || ||||| || || || ||||||| ||| | ||| | || | || Sbjct 264 CATATACGGAGTTCCAGTCTCGATTTGAGATTCTAGAATTTTCTCCCACAATTCATGTGC 205 Query 53899 CTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGT--ATACAATCGTTCAAAC 53956 || ||| | ||| || || || ||||| ||| | ||| ||| ||||||| Sbjct 204 TTTAATTGTT--TTTCTACCTTTTCCAGCTTTCTCGTAGCTTTCATATAATGCTTCAAAC 147 Query 53957 TCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCT 54016 || || || |||||| || ||||||||||||||| | |||||||| || | ||| | | Sbjct 146 TCTTCACCATAAACATCGTACAATCCAGGACATTCGTTAGGACACATTAAAGTCCAGTTT 87 Query 54017 CCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCT 54076 ||||| || | || |||||||| || | ||||| | |||| | || | |||| |||| Sbjct 86 CCGTCTTCTTGTACACGTTTCATGAATAAATCAGAAGTCCACATGGCAAAGAATAAATCT 27 Query 54077 CTGGTTCTATGTTCCTCGTTTCCTGT 54102 || | | ||| || |||||||| Sbjct 26 CTTGCACGCATTTCTTCTTTTCCTGT 1 >seq103378 Length=1867 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | ||||| || ||||| || ||||| ||||| || || | ||| Sbjct 579 GTGCCGGCATTGAACAGTGTAGGTGAGGCGTGGGTGAACCACTTTTCCGACAGCAAGTTG 520 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 |||||||| || |||| || || || | || ||||| || || || || | ||||| | Sbjct 519 TACGTCTCAATGGCTGCATCGATGTCTCTTTTGTGAATCCCGACGGCCACTCTCATTAGC 460 Query 54545 ATGTGCTGAGGTCTTTCA 54562 |||||||| ||||| ||| Sbjct 459 ATGTGCTGGGGTCTCTCA 442 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 53758 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 53817 |||||| ||||| ||||| || | ||||||||||| | ||| || || || ||||| Sbjct 1774 TATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTTCCC 1715 Query 53818 GTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAAT 53877 ||| || || ||||| || || ||| | |||||||| |||||| |||| || || || || Sbjct 1714 GTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTTTCAGTCTGTGACTCGATGAT 1655 Query 53878 CGCTTTCCA 53886 || | ||| Sbjct 1654 GGCGTACCA 1646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589821576396960