Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq6427 141 1e-28
seq152719 125 7e-24
seq231358 120 3e-22
seq59938 109 6e-19
seq59939 84.2 2e-11
>seq6427
Length=3314
Score = 141 bits (156), Expect = 1e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAG 40770
||||||||||| ||||||||| | || || || ||| ||||| | | ||| |||||
Sbjct 3313 CTCACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGCGACACCATCGAAAATGTCAAG 3254
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
| || || | ||||| || ||||| ||| | || ||||| | || |||| || |||
Sbjct 3253 GCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCTTTGCCGGC 3194
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| |||||||| || | ||||||||| |||||||||||||||||||||| |||| ||
Sbjct 3193 AAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTC 3134
Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||| || | || |||| |||||
Sbjct 3133 CATCTTGTCCTCCGTCTGAGAGGCGG 3108
>seq152719
Length=2073
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || || || ||||||| | || || ||| ||| |
Sbjct 270 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGTCCATCACTCTGGAGGTTGAACCCAGC 211
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||| | || || | || || ||||||||||| | || |||
Sbjct 210 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAGGGCATCCCTCCTGATCAG 151
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| || ||||| |||||||| |||| ||||| ||| ||||||||||
Sbjct 150 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAAC 91
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||| ||| |||| || ||||| ||| | ||| |||| || ||
Sbjct 90 ATCCAGAAAGAGTCCACCCTCCATCTTGTGCTCCGCCTGAGAGGAGG 44
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|| || || || || || || ||||| ||||| || ||||| | | || ||| ||| |
Sbjct 498 ATTCAGATCTTTGTGAAGACCCTCACAGGCAAGACTATCACTCTGGTGGTTGAACCCAAC 439
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||| | || || | || || || |||||||| | ||||||
Sbjct 438 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCAG 379
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | ||||||| || ||||| |||||||| |||| ||||| ||| ||||||||||
Sbjct 378 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAAC 319
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||| ||| || | ||||| || ||||| |||| || ||
Sbjct 318 ATCCAGAAAGAGTCCTGCATTCATCTGGTCTTGCGGCTGAGAGGAGG 272
Score = 100 bits (110), Expect = 3e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || || || || || || || || || || ||||| | || || ||| ||
Sbjct 729 AAGATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACTATCACTCTGGAGGTTGAACCC 670
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| ||||| | | | | | || | || || | || || ||||||||||| | ||
Sbjct 669 AGCGACACCATTGAGAATGTAAAAGCTAAGATCCAGGATAAGGAGGGCATCCCTCCTGAT 610
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| | || |||| || ||||| |||||||| || | |||||| | || ||
Sbjct 609 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCATGTCAGATTAT 550
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||| || |||| | ||||| ||| |||||||||| || ||
Sbjct 549 AACATCCAGAAAGAATCCACCATCCATCTTGTGCTGCGCTTGAGAGGAGG 500
>seq231358
Length=2322
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091
|| ||||| ||||||||||||| ||||| ||||| ||||||| || || |||||
Sbjct 763 GGAGAGCGAGTGGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGGTCCTTCGCT 704
Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151
||||| || ||||| ||||| | ||||| |||||||||||||| ||| ||| ||||||
Sbjct 703 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAATGAGCTC 644
Query 117152 ATCTCCAGGGACGAGG 117167
||| ||| |||||||
Sbjct 643 ATCAGCAGAGACGAGG 628
Score = 118 bits (130), Expect = 1e-21
Identities = 95/115 (83%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862
||| ||||| ||| ||||||||||||||| | ||||| || |||||||| ||||| ||
Sbjct 1149 GGTGGAGCGCTTCATGCAGGAGGTGCAGGTGACGGAGGCCCGCTGCTTCTATGGCTTCCA 1090
Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||||||||||||| | |||||||| ||||| ||||||||||||||||
Sbjct 1089 GATCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTCATCGACACGTAC 1035
Score = 118 bits (130), Expect = 1e-21
Identities = 101/122 (83%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743
|||||||||||||||||||| | ||| |||||||| |||| ||| | ||| | |
Sbjct 1355 AGGTGGACCTGTCCAAGGACCTGCAGC-ACTGGGAGTCTCTGAAGGACGAGGAGAGGTAC 1297
Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803
|||||| |||||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1296 TTCATCTCCCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 1237
Query 116804 GT 116805
||
Sbjct 1236 GT 1235
>seq59938
Length=2926
Score = 109 bits (120), Expect = 6e-19
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || ||||| ||||| ||||||||| | || || || ||| ||||| | |
Sbjct 2926 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGCGACACCATTG 2867
Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819
||| |||||| || || | ||||| || ||||| ||| | || ||||| | || |
Sbjct 2866 AAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGA 2807
Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879
||| || ||||| || ||| || | ||||||||| | | ||||||||||||||||
Sbjct 2806 TCTTTGCCGGCAAGCATTCGGAAGATGGCCGCACCCTCT-CTA-TACAACATCCAGAAGG 2749
Query 40880 AGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| |||| || | ||| || ||| ||||||| ||
Sbjct 2748 AGTCCACCCTCCGTCTGGTCCTGCATCTGAGGGGTGG 2712
>seq59939
Length=800
Score = 84.2 bits (92), Expect = 2e-11
Identities = 120/169 (71%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745
||| ||||| || || || || || ||||||||||| ||||||||| |||| || || |
Sbjct 169 AAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGAGCC 110
Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||| | ||| |||||| || || | ||||| || ||||| ||| | ||
Sbjct 109 TAGTGACACAATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 50
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854
||||| | || |||| || || || |||||||| || | ||||||
Sbjct 49 TCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511834840999520
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